RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TDHQ8IZJ6 230 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 CSNK1A1LQ8N752 337 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 NPRL2Q8WTW4 380 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 TOE1Q96GM8 510 aaKnown RBP14.17□□□□□ -0.14
SHH-201ENST00000297261 ARL5BQ96KC2 179 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 TMEM231Q9H6L2 316 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 HIF3AQ9Y2N7 669 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 ZNF638Q14966 1978 aaKnown RBP14.17□□□□□ -0.14
SHH-201ENST00000297261 TTLL8A6PVC2 850 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 LEUTXA8MZ59 168 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 GABARAPH6UMI1 98 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 WDPCPO95876 746 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 ZNF28P17035 718 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 EIF2S3P41091 472 aaKnown RBP14.17□□□□□ -0.14
SHH-201ENST00000297261 RFX2P48378 723 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 SLC35D2Q76EJ3 337 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 MS4A8Q9BY19 250 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 SEMA4CQ9C0C4 833 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 SLC6A14Q9UN76 642 aa14.17□□□□□ -0.14
SHH-201ENST00000297261 MIA3Q5JRA6 1907 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 IGLV3-16A0A075B6K0 115 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 H7C1C5 153 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 PRKAR1BP31321 381 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 LCN6P62502 163 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 PRDX1Q06830 199 aaKnown RBP14.16□□□□□ -0.14
SHH-201ENST00000297261 DEFB110Q30KQ9 67 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 SLC25A35Q3KQZ1 300 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 SLC6A19Q695T7 634 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 ETFBKMTQ8IXQ9 262 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 OR10Z1Q8NGY1 313 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 INTS14Q96SY0 518 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 MARVELD1Q9BSK0 173 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 TCEAL2Q9H3H9 227 aaPredicted RBP14.16□□□□□ -0.14
SHH-201ENST00000297261 SLC2A4RGQ9NR83 387 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 KLK11Q9UBX7 282 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 ATG2BQ96BY7 2078 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 ZNF593O00488 134 aaPredicted RBP14.16□□□□□ -0.14
SHH-201ENST00000297261 TO15178 435 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 LGI1O95970 557 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 UBE2IP63279 158 aaKnown RBP14.16□□□□□ -0.14
SHH-201ENST00000297261 PEX11GQ96HA9 241 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 ZDHHC5Q9C0B5 715 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 HRASLSQ9HDD0 168 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 PUS1Q9Y606 427 aaKnown RBP eCLIP14.16□□□□□ -0.14
SHH-201ENST00000297261 DOK2O60496 412 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 CBFBQ13951 182 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 GPR157Q5UAW9 335 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 FAM111BQ6SJ93 734 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 RHOUQ7L0Q8 258 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 DPY19L4Q7Z388 723 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 OR8D4Q8NGM9 314 aa14.16□□□□□ -0.14
SHH-201ENST00000297261 ZNF223Q9UK11 482 aaPredicted RBP14.16□□□□□ -0.14
SHH-201ENST00000297261 OTOL1A6NHN0 477 aaPredicted RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 SGK494L7N484 410 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 NRG2O14511 850 aaPredicted RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 ALDH3B1P43353 468 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 RABIFP47224 123 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 PDX1P52945 283 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 RNF141Q8WVD5 230 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 C14orf79Q96F83 325 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 MED18Q9BUE0 208 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 ALG12Q9BV10 488 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 PLA2G12AQ9BZM1 189 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 PIGMQ9H3S5 423 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 ELOVL3Q9HB03 270 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 SDHAF3Q9NRP4 125 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 POMT2Q9UKY4 750 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 ATG4BQ9Y4P1 393 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 IFNA2P01563 188 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 Q499Y3 187 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 P4HA3Q7Z4N8 544 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 TMEFF1Q8IYR6 380 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 TEX19Q8NA77 164 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 SLAMF9Q96A28 289 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 FTSJ1Q9UET6 329 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 PRODH2Q9UF12 536 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 MBD1Q9UIS9 605 aaPredicted RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 SPTBP11277 2137 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 SYT5O00445 386 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 SYT7O43581 403 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 DCTDP32321 178 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 ADPRHP54922 357 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 MESP2Q0VG99 397 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 MEF2DQ14814 521 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 FIGLAQ6QHK4 219 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 CMTM4Q8IZR5 234 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 OR5T1Q8NG75 326 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 OR52B4Q8NGK2 314 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 UNKLQ9H9P5 680 aaKnown RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 SLC23A2Q9UGH3 650 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 RPH3AQ9Y2J0 694 aaPredicted RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 B3GALT1Q9Y5Z6 326 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 PLA2G10O15496 165 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 P2RX6O15547 441 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 DHPSP49366 369 aaPredicted RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 IDH3GP51553 393 aaPredicted RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 TNK1Q13470 666 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 EBPQ15125 230 aaKnown RBP14.15□□□□□ -0.14
SHH-201ENST00000297261 GKN2Q86XP6 184 aa14.15□□□□□ -0.14
SHH-201ENST00000297261 CLRN3Q8NCR9 226 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms