RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DPY19L4Q7Z388 723 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 PNLDC1Q8NA58 520 aaKnown RBP10.52□□□□□ -0.72
VPS4A-201ENST00000254950 OR52N1Q8NH53 320 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF346Q9UL40 294 aaKnown RBP10.52□□□□□ -0.72
VPS4A-201ENST00000254950 SCN1BQ07699 218 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 SKP2Q13309 424 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 TAB1Q15750 504 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 KRT74Q7RTS7 529 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 MFSD8Q8NHS3 518 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 FAM173AQ9BQD7 235 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 DSPPQ9NZW4 1301 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF593O00488 134 aaPredicted RBP10.52□□□□□ -0.73
VPS4A-201ENST00000254950 SLC10A1Q14973 349 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 OR1C1Q15619 314 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 BCL2L15Q5TBC7 163 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 OR4Q3Q8NH05 313 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 GPR119Q8TDV5 335 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 KCNE4Q8WWG9 221 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 GNRHR2Q96P88 292 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 CDCA4Q9BXL8 241 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 POTEKPQ9BYX7 375 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 TXNIPQ9H3M7 391 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 CLEC2DQ9UHP7 191 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 HS3ST3B1Q9Y662 390 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 FKBP7Q9Y680 259 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 IGKV3D-11A0A0A0MRZ8 115 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 METTL15A6NJ78 407 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 WBP4O75554 376 aaKnown RBP10.52□□□□□ -0.73
VPS4A-201ENST00000254950 SEC14L2O76054 403 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 CYB5AP00167 134 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 SEMG1P04279 462 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 IGKV3-11P04433 115 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 NGFRP08138 427 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 RAB40ALP0C0E4 278 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 OR8G3PP0DMU2 310 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 B3GNTL1Q67FW5 361 aaPredicted RBP10.52□□□□□ -0.73
VPS4A-201ENST00000254950 BICRALQ6AI39 1079 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 SLC46A3Q7Z3Q1 461 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 VASH2Q86V25 355 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF454Q8N9F8 522 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 CHST4Q8NCG5 386 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 ZFP3Q96NJ6 502 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 ENKD1Q9H0I2 346 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 WDR76Q9H967 626 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 DIABLOQ9NR28 239 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 RASD1Q9Y272 281 aa10.52□□□□□ -0.73
VPS4A-201ENST00000254950 TMEM129A0AVI4 362 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 GPRIN2O60269 458 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SPI1P17947 270 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ADH7P40394 386 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 DIO1P49895 249 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 GLT8D1Q68CQ7 371 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF704Q6ZNC4 412 aaPredicted RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF227Q86WZ6 799 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 BEST3Q8N1M1 668 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 GALNT16Q8N428 558 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SLC38A9Q8NBW4 561 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 GPR148Q8TDV2 347 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 EMC6Q9BV81 110 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 NAA50Q9GZZ1 169 aaKnown RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ELOVL3Q9HB03 270 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 PLEK2Q9NYT0 353 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 PCDHGA3Q9Y5H0 932 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 TGFBR3LH3BV60 316 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 CDC42EP2O14613 210 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ARPC3O15145 178 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 TSPAN2O60636 221 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SCG5P05408 212 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SLC25A25Q6KCM7 469 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SNRNP27Q8WVK2 155 aaKnown RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SLC30A2Q9BRI3 323 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ERVK13-1Q9NX77 482 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 PLA2G3Q9NZ20 509 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 NEUROG3Q9Y4Z2 214 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 UNC80Q8N2C7 3258 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 NTN3O00634 580 aaPredicted RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ETV5P41161 510 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 CASP3P42574 277 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ACAA2P42765 397 aaKnown RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 CASP6P55212 293 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 UBE2NP61088 152 aaKnown RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 INSM1Q01101 510 aaPredicted RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 MRPL49Q13405 166 aaKnown RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 OR7E24Q6IFN5 339 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 RPL22L1Q6P5R6 122 aaKnown RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 GALNTL5Q7Z4T8 443 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ABHD12BQ7Z5M8 362 aaPredicted RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ATG4DQ86TL0 474 aaPredicted RBP10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SGCDQ92629 289 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 TAAR8Q969N4 342 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ADIPOR1Q96A54 375 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 GAL3ST1Q99999 423 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 PSD2Q9BQI7 771 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 ZFP64Q9NPA5 681 aa10.51□□□□□ -0.73
VPS4A-201ENST00000254950 SHISA8B8ZZ34 492 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 CAPNS1P04632 268 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 GUSBP08236 651 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 HCKP08631 526 aa10.5□□□□□ -0.73
VPS4A-201ENST00000254950 PPIAP62937 165 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms