RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CD1AP06126 327 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 CSRP1P21291 193 aaKnown RBP11.31□□□□□ -0.6
NUP88-201ENST00000225696 CAPZA2P47755 286 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 MAZP56270 477 aaKnown RBP11.31□□□□□ -0.6
NUP88-201ENST00000225696 LCN6P62502 163 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 HTRA4P83105 476 aaPredicted RBP11.31□□□□□ -0.6
NUP88-201ENST00000225696 LIPNQ5VXI9 398 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 LRFN4Q6PJG9 635 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 SAMD14Q8IZD0 417 aaPredicted RBP11.31□□□□□ -0.6
NUP88-201ENST00000225696 OR14C36Q8NHC7 312 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 SCARB1Q8WTV0 552 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 SGTBQ96EQ0 304 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 ZNF578Q96N58 590 aaPredicted RBP11.31□□□□□ -0.6
NUP88-201ENST00000225696 ASB16Q96NS5 453 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 ALG12Q9BV10 488 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 SLC17A9Q9BYT1 436 aa11.31□□□□□ -0.6
NUP88-201ENST00000225696 RSPH9Q9H1X1 276 aaPredicted RBP11.31□□□□□ -0.6
NUP88-201ENST00000225696 TTYH1Q9H313 450 aaPredicted RBP11.31□□□□□ -0.6
NUP88-201ENST00000225696 TVP23AA6NH52 213 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 H0YGG7 62 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 H3BUI4 141 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 SMAD9O15198 467 aaKnown RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 FBXO45P0C2W1 286 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 MST1P26927 711 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 GJA4P35212 333 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 ARF3P61204 181 aaPredicted RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 PDGFRLQ15198 375 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 LEG1Q6P5S2 330 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 GSG1LQ6UXU4 331 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 DNM1P46Q6ZS02 220 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 OR51S1Q8NGJ8 323 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 FAM3CQ92520 227 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 TSACCQ96A04 125 aaPredicted RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 ANKRD9Q96BM1 317 aaPredicted RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 ZNF524Q96C55 264 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 CTHRC1Q96CG8 243 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 MYADMQ96S97 322 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 GPN1Q9HCN4 374 aaPredicted RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 TCF7L1Q9HCS4 588 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 C14orf105Q9NVL8 296 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 ZNF230Q9UIE0 474 aaPredicted RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 COLEC10Q9Y6Z7 277 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 PRSS38A1L453 326 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 BLOC1S5-TXNDC5H3BN57 136 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 SULT1B1O43704 296 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 NKX2-2O95096 273 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 RAB40ALP0C0E4 278 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 S1PR1P21453 382 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 AQP2P41181 271 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 RBM34P42696 430 aaKnown RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 DLX5P56178 289 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 SORDQ00796 357 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 LTBQ06643 244 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 PRRT3Q5FWE3 981 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 FAM74A1Q5RGS3 127 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 ULK3Q6PHR2 472 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 FIGLAQ6QHK4 219 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 C17orf107Q6ZR85 190 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 SLC35F3Q8IY50 421 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 ZNF454Q8N9F8 522 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 OR2AK2Q8NG84 335 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 OR8S1Q8NH09 359 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 OR4C3Q8NH37 302 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 PATE1Q8WXA2 126 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 RAB40AQ8WXH6 277 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 OR1E3Q8WZA6 343 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 MARC2Q969Z3 335 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 DNAJA3Q96EY1 480 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 SPACA7Q96KW9 195 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 SRA1Q9HD15 236 aaKnown RBP11.3□□□□□ -0.6
NUP88-201ENST00000225696 MED9Q9NWA0 146 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 LRIT1Q9P2V4 623 aa11.3□□□□□ -0.6
NUP88-201ENST00000225696 KIAA0100Q14667 2235 aaKnown RBP11.29□□□□□ -0.6
NUP88-201ENST00000225696 OR6C74A6NCV1 312 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 TGFBR3LH3BV60 316 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 H7C417 338 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 FOXS1O43638 330 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 ITGA10O75578 1167 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 RASGRP1O95267 797 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 TIMP1P01033 207 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 HNRNPA1P09651 372 aaKnown RBP eCLIP11.29□□□□□ -0.6
NUP88-201ENST00000225696 CALCBP10092 127 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 CALCRP30988 508 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 SEC13P55735 322 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 PPP1CAP62136 330 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 ILF3Q12906 894 aaKnown RBP eCLIP11.29□□□□□ -0.6
NUP88-201ENST00000225696 GAS6Q14393 721 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 Q499Y3 187 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 B3GNTL1Q67FW5 361 aaPredicted RBP11.29□□□□□ -0.6
NUP88-201ENST00000225696 TANGO2Q6ICL3 276 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 DPY19L2P2Q6ZN68 376 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 EID2Q8N6I1 236 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 OR51D1Q8NGF3 324 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 OR5AK2Q8NH90 309 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 SLC25A28Q96A46 364 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 MRPS24Q96EL2 167 aaKnown RBP11.29□□□□□ -0.6
NUP88-201ENST00000225696 MOGAT1Q96PD6 335 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 KLHDC3Q9BQ90 382 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 TRIM2Q9C040 744 aa11.29□□□□□ -0.6
NUP88-201ENST00000225696 WDR13Q9H1Z4 485 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms