RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 B4DXG7 233 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TOX3O15405 576 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TUSC2O75896 110 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SEMA4FO95754 770 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FTH1P19P0C7X4 201 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 HLA-DOBP13765 273 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 EFNA3P52797 238 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CMC4P56277 68 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 IGFBP7Q16270 282 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 METTL2BQ6P1Q9 378 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LEG1Q6P5S2 330 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TRMT10BQ6PF06 316 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF704Q6ZNC4 412 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 C15orf39Q6ZRI6 1047 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NR2C2APQ86WQ0 139 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 Q8N9G6 341 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 KDF1Q8NAX2 398 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FNDC9Q8TBE3 224 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PROKR1Q8TCW9 393 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SFXN5Q8TD22 340 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 METTL2AQ96IZ6 378 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CYP2S1Q96SQ9 504 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CNN2Q99439 309 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NXF5Q9H1B4 397 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 HRH4Q9H3N8 390 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 AAMDCQ9H7C9 122 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 EBF2Q9HAK2 575 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 IL17RBQ9NRM6 502 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PUS1Q9Y606 427 aaKnown RBP eCLIP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 MEGF11A6BM72 1044 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SEMA7AO75326 666 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CSF1P09603 554 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 H2BFMP0C1H6 154 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CD79AP11912 226 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PTTG1IPP53801 180 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GTF2H2Q13888 395 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR4C11Q6IEV9 310 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ADAM5Q6NVV9 412 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GTF2H2CQ6P1K8 395 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OVCH2Q7RTZ1 564 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZDHHC21Q8IVQ6 265 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 DNAJC22Q8N4W6 341 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LFNGQ8NES3 379 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CELF6Q96J87 481 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF681Q96N22 645 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 WRAP53Q9BUR4 548 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PHF7Q9BWX1 381 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF768Q9H5H4 540 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CYSLTR2Q9NS75 346 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SLCO1C1Q9NYB5 712 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TVP23BQ9NYZ1 205 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RGPD4Q7Z3J3 1758 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ARFGEF2Q9Y6D5 1785 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SMLR1H3BR10 107 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CNOT4O95628 575 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SCGB1A1P11684 91 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 HSD17B1P14061 328 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TPMTP51580 245 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PPP1CBP62140 327 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FAM27D1Q5T7N8 215 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 BRICD5Q6PL45 260 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LARP4Q71RC2 724 aaKnown RBP eCLIP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SCD5Q86SK9 330 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 BCORP1Q8N888 145 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SGK3Q96BR1 496 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 HHIPL1Q96JK4 782 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FAM173AQ9BQD7 235 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 VAMP8Q9BV40 100 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 DCAF13Q9NV06 445 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF701Q9NV72 531 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PROCRQ9UNN8 238 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 A6NDN8 102 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZBTB42B2RXF5 422 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 H0YIV9 168 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FFAR2O15552 330 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 EMC8O43402 210 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GATCO43716 136 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RPP14O95059 124 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 THBS1P07996 1170 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ACPPP15309 386 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GDF1P27539 372 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 HOXC13P31276 330 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 HNRNPH3P31942 346 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PTGER3P43115 390 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PODNL1Q6PEZ8 512 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LRFN4Q6PJG9 635 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM205Q6UW68 189 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 B3GNT9Q6UX72 402 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FAM151BQ6UXP7 276 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SLC16A12Q6ZSM3 486 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 DEFB132Q7Z7B7 95 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 C1orf52Q8N6N3 182 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR52E4Q8NGH9 312 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR2T35Q8NGX2 323 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LRRN4Q8WUT4 740 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ART4Q93070 314 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR4K3Q96R72 315 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PITHD1Q9GZP4 211 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 AMBNQ9NP70 447 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CISHQ9NSE2 258 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms