RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TNFSF14O43557 240 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 HCRTO43612 131 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 HLA-DOBP13765 273 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 NFYAP23511 347 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 RPL13AP40429 203 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 MRPL19P49406 292 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ERVK-25P63136 954 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ACSM5Q6NUN0 579 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 DBX2Q6ZNG2 339 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 OR2A12Q8NGT7 310 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 KIRREL1Q96J84 757 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TSNAXQ99598 290 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PATZ1Q9HBE1 687 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 MYO16Q9Y6X6 1858 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 LRRC3CA6NJW4 275 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 FAM171A2A8MVW0 826 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 VAMP5O95183 116 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PROZP22891 400 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PCGF2P35227 344 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ADPRHP54922 357 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 RPS16P62249 146 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 GPR19Q15760 415 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SMIM21Q3B7S5 101 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ANKRD33Q7Z3H0 272 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF573Q86YE8 665 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 MAML2Q8IZL2 1156 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ABHD6Q9BV23 337 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PCED1AQ9H1Q7 454 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 C1orf123Q9NWV4 160 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ADAM29Q9UKF5 820 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PLXNB2O15031 1838 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TCRBV7S2A1N4TA0A589 114 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 GALR2O43603 387 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 UBL3O95164 117 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 CLDN1O95832 211 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ADRA1AP35348 466 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF45Q02386 682 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 OR1Q1Q15612 314 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 DUSP7Q16829 419 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF626Q68DY1 528 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 FCRLBQ6BAA4 426 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 CDH26Q8IXH8 852 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TRUB1Q8WWH5 349 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 LIPHQ8WWY8 451 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 NMNAT2Q9BZQ4 307 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TOR3AQ9H497 397 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 WRAP73Q9P2S5 460 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 OR5V1Q9UGF6 321 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 GOLT1BQ9Y3E0 138 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TRAV18A0A075B6X5 111 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 NDUFB3O43676 98 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 CACNG3O60359 315 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SORBS2O94875 1100 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 CHATP28329 748 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ADAM17P78536 824 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 IL11RAQ14626 422 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 UGT8Q16880 541 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 RPS26P11Q5JNZ5 115 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 MFSD4AQ8N468 514 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 OR7G3Q8NG95 312 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TFAP2CQ92754 450 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 NEIL2Q969S2 332 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM230Q96A57 120 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 WNT16Q9UBV4 365 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PIGLQ9Y2B2 252 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 STYXL1Q9Y6J8 313 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 A0A1B0GV50 99 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM233B4DJY2 109 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 AIPO00170 330 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TGM1P22735 817 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 GGT5P36269 586 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 BPIFB3P59826 476 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PRDX1Q06830 199 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SNTB2Q13425 540 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF322Q6U7Q0 402 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 HSD17B8Q92506 261 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 BTF3L4Q96K17 158 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SAMD10Q9BYL1 202 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM231Q9H6L2 316 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 DHCR7Q9UBM7 475 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SIX4Q9UIU6 781 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 NUP214P35658 2090 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ATXN7O15265 892 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ANGPTL7O43827 346 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 POU3F3P20264 500 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 HOXC8P31273 242 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 NR4A2P43354 598 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 LCN6P62502 163 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 EVX2Q03828 476 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 CEACAM7Q14002 265 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF74Q16587 644 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 HLA-BQ31612 363 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 C22orf42Q6IC83 251 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 MED25Q71SY5 747 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 NAXDQ8IW45 347 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 FBXO17Q96EF6 278 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 OR7D2Q96RA2 312 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 GSTO2Q9H4Y5 243 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 KIR3DX1Q9H7L2 352 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SLC2A8Q9NY64 477 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms