RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 FOSL1P15407 271 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 SELENOWP63302 87 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 OR1Q1Q15612 314 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 NPTX1Q15818 432 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 C1QTNF12Q5T7M4 302 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 FAM69AQ5T7M9 428 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 PRSS57Q6UWY2 283 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 CARM1Q86X55 608 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 POMGNT2Q8NAT1 580 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 C1orf162Q8NEQ5 155 aaPredicted RBP16.91■□□□□ 0.3
CLN3-260ENST00000637578 OR6S1Q8NH40 331 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 LZICQ8WZA0 190 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 TAAR8Q969N4 342 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 SLC47A1Q96FL8 570 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 GSX2Q9BZM3 304 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 LRMDAQ9H2I8 198 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 TMEM27Q9HBJ8 222 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 DCAF13Q9NV06 445 aaKnown RBP16.91■□□□□ 0.3
CLN3-260ENST00000637578 UPB1Q9UBR1 384 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 ACANP16112 2415 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 ARID1AO14497 2285 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 CADP27708 2225 aa16.91■□□□□ 0.3
CLN3-260ENST00000637578 CIB4A0PJX0 185 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 OR1E2P47887 323 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 MS4A2Q01362 244 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 TRIM25Q14258 630 aaKnown RBP16.9■□□□□ 0.3
CLN3-260ENST00000637578 SWT1Q5T5J6 900 aaKnown RBP16.9■□□□□ 0.3
CLN3-260ENST00000637578 PGM2L1Q6PCE3 622 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 RANBP3LQ86VV4 465 aaPredicted RBP16.9■□□□□ 0.3
CLN3-260ENST00000637578 SLC25A36Q96CQ1 311 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 HSH2DQ96JZ2 352 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 NSMCE2Q96MF7 247 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 SLCO5A1Q9H2Y9 848 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 B3GAT1Q9P2W7 334 aa16.9■□□□□ 0.3
CLN3-260ENST00000637578 TRAV36DV7A0A075B6V5 113 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 LOC102725191A0A1B0GVB3 256 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 ARHGEF9O43307 516 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 DANCRP0C864 163 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 ATP6V1B2P21281 511 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 MPGP29372 298 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 GABPB1Q06547 395 aaPredicted RBP16.89■□□□□ 0.3
CLN3-260ENST00000637578 ZNF672Q499Z4 452 aaPredicted RBP16.89■□□□□ 0.3
CLN3-260ENST00000637578 CYP2R1Q6VVX0 501 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 LINC00114Q6XXX2 140 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 C17orf78Q8N4C9 275 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 FAM86B1Q8N7N1 296 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 WDR31Q8NA23 367 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 MCUR1Q96AQ8 359 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 MUC13Q9H3R2 512 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 ZNF701Q9NV72 531 aaPredicted RBP16.89■□□□□ 0.3
CLN3-260ENST00000637578 ACTR3BQ9P1U1 418 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 RPS6KA6Q9UK32 745 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 B3GALT5Q9Y2C3 310 aa16.89■□□□□ 0.3
CLN3-260ENST00000637578 SHISA9B4DS77 424 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 CLOCKO15516 846 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 CDH12P55289 794 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 TGFBR3Q03167 851 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 ZNF613Q6PF04 617 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 ADPRHL1Q8NDY3 354 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 ASB9Q96DX5 294 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 SLC41A3Q96GZ6 507 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 OXGR1Q96P68 337 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 MCHR1Q99705 422 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 SEC14L4Q9UDX3 406 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 SAMD4AQ9UPU9 718 aaKnown RBP16.89■□□□□ 0.29
CLN3-260ENST00000637578 V9GYQ6 96 aa16.89■□□□□ 0.29
CLN3-260ENST00000637578 OR6C65A6NJZ3 312 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 SELENOPP49908 381 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 IFI44LQ53G44 452 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 FKBP9P1Q75LS8 142 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 H1FNTQ75WM6 255 aaPredicted RBP16.88■□□□□ 0.29
CLN3-260ENST00000637578 TSPYL5Q86VY4 417 aaPredicted RBP16.88■□□□□ 0.29
CLN3-260ENST00000637578 DHFR2Q86XF0 187 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 P3H2Q8IVL5 708 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 KDM8Q8N371 416 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 KBTBD8Q8NFY9 601 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 OR52N5Q8NH56 324 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 GEMIN6Q8WXD5 167 aaKnown RBP16.88■□□□□ 0.29
CLN3-260ENST00000637578 NEUROG1Q92886 237 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 FBXW5Q969U6 566 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 TMEM43Q9BTV4 400 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 SLC17A5Q9NRA2 495 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 SELENONQ9NZV5 590 aa16.88■□□□□ 0.29
CLN3-260ENST00000637578 FLNAP21333 2647 aaKnown RBP16.87■□□□□ 0.29
CLN3-260ENST00000637578 M0R082 166 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 OVOL3O00110 214 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 ZNF432O94892 652 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 BGLAPP02818 100 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 GRPRP30550 384 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 PTH2RP49190 550 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 LTBQ06643 244 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 MFSD13AQ14CX5 517 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 Q5PR19 223 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 LCN8Q6JVE9 175 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 DEF8Q6ZN54 512 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 ASRGL1Q7L266 308 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 ABHD12BQ7Z5M8 362 aaPredicted RBP16.87■□□□□ 0.29
CLN3-260ENST00000637578 ZNF417Q8TAU3 575 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 TMEM171Q8WVE6 324 aa16.87■□□□□ 0.29
CLN3-260ENST00000637578 RADILQ96JH8 1075 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms