RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CYB561A3Q8NBI2 242 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 LSM14AQ8ND56 463 aaKnown RBP16.54■□□□□ 0.24
CLN3-254ENST00000637050 CCDC86Q9H6F5 360 aaKnown RBP16.54■□□□□ 0.24
CLN3-254ENST00000637050 GRHPRQ9UBQ7 328 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 ZNF346Q9UL40 294 aaKnown RBP16.54■□□□□ 0.24
CLN3-254ENST00000637050 CSAG2Q9Y5P2 127 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 LINC01387J3KSC0 135 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 M0R3G1 203 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 SULT2B1O00204 365 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 AKR7A3O95154 331 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 SLC2A5P22732 501 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 GFRA1P56159 465 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 OR2B6P58173 313 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 PLGLB1Q02325 96 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 MEPCEQ7L2J0 689 aaKnown RBP16.53■□□□□ 0.24
CLN3-254ENST00000637050 SATL1Q86VE3 508 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 SVOPQ8N4V2 548 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 TMEM251Q8N6I4 163 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 OTULINQ96BN8 352 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 KLHL15Q96M94 604 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 SFXN2Q96NB2 322 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 NMNAT3Q96T66 252 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 VCX3AQ9NNX9 186 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 A0A1W2PNV4 684 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 ADRA2AP08913 450 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 CDKN2AP42771 156 aaKnown RBP16.53■□□□□ 0.24
CLN3-254ENST00000637050 P2RY4P51582 365 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 RPL27P61353 136 aaKnown RBP16.53■□□□□ 0.24
CLN3-254ENST00000637050 SLC35A1P78382 337 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 RAB40BQ12829 278 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 KRR1Q13601 381 aaKnown RBP16.53■□□□□ 0.24
CLN3-254ENST00000637050 IRF3Q14653 427 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 NEDD8Q15843 81 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 ACKR1Q16570 336 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 KLHL22Q53GT1 634 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 MESTQ5EB52 335 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 PNPLA5Q7Z6Z6 429 aaPredicted RBP16.53■□□□□ 0.24
CLN3-254ENST00000637050 TMEM99Q8N816 258 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 LGALS12Q96DT0 336 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 RNFT2Q96EX2 444 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 FAM210AQ96ND0 272 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 CDCA4Q9BXL8 241 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 NMNAT2Q9BZQ4 307 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 TXNIPQ9H3M7 391 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 QPCTLQ9NXS2 382 aa16.53■□□□□ 0.24
CLN3-254ENST00000637050 A0A0J9YW62 118 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 IRGMA1A4Y4 181 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 OR6C68A6NDL8 312 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 NPIPB13A6NJU9 1138 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 FAM166BA8MTA8 275 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 NPIPB4C9JG80 1138 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 MAGEA5P43359 124 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 MAP2K4P45985 399 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 TMED1Q13445 227 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 PXKQ7Z7A4 578 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 JAZF1Q86VZ6 243 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 ARIH2OSQ8N7S6 290 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 OR52I1Q8NGK6 324 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 ZNF519Q8TB69 540 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 SMPDL3BQ92485 455 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 KISS1RQ969F8 398 aaPredicted RBP16.52■□□□□ 0.23
CLN3-254ENST00000637050 TMEM80Q96HE8 168 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 MFRPQ9BY79 579 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 FGF20Q9NP95 211 aaPredicted RBP16.52■□□□□ 0.23
CLN3-254ENST00000637050 ACOT13Q9NPJ3 140 aa16.52■□□□□ 0.23
CLN3-254ENST00000637050 WARS2Q9UGM6 360 aaKnown RBP16.52■□□□□ 0.23
CLN3-254ENST00000637050 PCDHGA9Q9Y5G4 932 aaKnown RBP16.52■□□□□ 0.23
CLN3-254ENST00000637050 A0A1W2PRG6 482 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 CCDC182A6NF36 153 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 SLC22A31A6NKX4 558 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 FADS2O95864 444 aaKnown RBP16.51■□□□□ 0.23
CLN3-254ENST00000637050 PLGP00747 810 aaPredicted RBP16.51■□□□□ 0.23
CLN3-254ENST00000637050 CELA3AP09093 270 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 CLUP10909 449 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 HLA-DOBP13765 273 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 PPIAP62937 165 aaKnown RBP16.51■□□□□ 0.23
CLN3-254ENST00000637050 H3F3AP84243 136 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 TBCEQ15813 527 aaPredicted RBP16.51■□□□□ 0.23
CLN3-254ENST00000637050 ARMC4Q5T2S8 1044 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 GTF2IRD2BQ6EKJ0 949 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 LEG1Q6P5S2 330 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 PAQR6Q6TCH4 344 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 IGFL3Q6UXB1 125 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 NHLRC1Q6VVB1 395 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 GTF2IRD2Q86UP8 949 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 GGNQ86UU5 652 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 SLC22A16Q86VW1 577 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 KDM8Q8N371 416 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 ZPLD1Q8TCW7 415 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 FAR1Q8WVX9 515 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 TMIGD2Q96BF3 282 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 TEAD3Q99594 435 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 B3GAT1Q9P2W7 334 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 DIMT1Q9UNQ2 313 aaKnown RBP16.51■□□□□ 0.23
CLN3-254ENST00000637050 EXOGQ9Y2C4 368 aaKnown RBP16.51■□□□□ 0.23
CLN3-254ENST00000637050 COMMD3-BMI1R4GMX3 469 aa16.51■□□□□ 0.23
CLN3-254ENST00000637050 TRAV17A0A0B4J275 112 aa16.5■□□□□ 0.23
CLN3-254ENST00000637050 AQP7P3A6NL99 342 aa16.5■□□□□ 0.23
CLN3-254ENST00000637050 ZNF814B7Z6K7 855 aa16.5■□□□□ 0.23
CLN3-254ENST00000637050 SERPINI2O75830 405 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms