RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 C1DQ13901 141 aaKnown RBP15.77■□□□□ 0.12
CLN3-247ENST00000636351 SLC17A1Q14916 467 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 ZNF74Q16587 644 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 TFAP2EQ6VUC0 442 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 ZNF730Q6ZMV8 503 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 H1FNTQ75WM6 255 aaPredicted RBP15.77■□□□□ 0.12
CLN3-247ENST00000636351 KRTAP1-3Q8IUG1 177 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 C7orf34Q96L11 122 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 ZNF426Q9BUY5 554 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 SF3B5Q9BWJ5 86 aaKnown RBP15.77■□□□□ 0.12
CLN3-247ENST00000636351 FANCFQ9NPI8 374 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 NANSQ9NR45 359 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 B3GALT5Q9Y2C3 310 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 DNHD1Q96M86 4753 aa15.77■□□□□ 0.12
CLN3-247ENST00000636351 EBAG9O00559 213 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 MRPL33O75394 65 aaKnown RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 VAMP5O95183 116 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 MT-ND1P03886 318 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 SEMG1P04279 462 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 HIST1H2ABP04908 130 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 H1F0P07305 194 aaKnown RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 INHBBP09529 407 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 ZNF43P17038 809 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 P2RY4P51582 365 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 TRAP1Q12931 704 aaKnown RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 FLOT2Q14254 428 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 ZNF474Q6S9Z5 364 aaPredicted RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 BEND4Q6ZU67 534 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 HIST3H2AQ7L7L0 130 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 NANOGNBQ7Z5D8 188 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 ZDHHC21Q8IVQ6 265 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 UBE2J2Q8N2K1 259 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 KDM8Q8N371 416 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 SCAIQ8N9R8 606 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 HIST1H2ACQ93077 130 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 APH1AQ96BI3 265 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 SGTBQ96EQ0 304 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 PIP5K1AQ99755 562 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 CADM1Q9BY67 442 aaKnown RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 FKRPQ9H9S5 495 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 NMNAT1Q9HAN9 279 aaPredicted RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 MEPEQ9NQ76 525 aaPredicted RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 PLSCR4Q9NRQ2 329 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 MAN2C1Q9NTJ4 1040 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 BEX4Q9NWD9 120 aaPredicted RBP15.76■□□□□ 0.11
CLN3-247ENST00000636351 TESMINQ9Y4I5 508 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 FLVCR1Q9Y5Y0 555 aa15.76■□□□□ 0.11
CLN3-247ENST00000636351 TCRBV5S2A0A599 114 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 GSC2O15499 205 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 SERPINI2O75830 405 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 OR7A10O76100 309 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 PRSS23O95084 383 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 OR6A2O95222 327 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 CD79BP40259 229 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 OR3A2P47893 321 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 NKX6-1P78426 367 aaPredicted RBP15.75■□□□□ 0.11
CLN3-247ENST00000636351 PUDPQ08623 228 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 RRM2BQ7LG56 351 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 TSEN54Q7Z6J9 526 aaKnown RBP15.75■□□□□ 0.11
CLN3-247ENST00000636351 SPATA24Q86W54 205 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 ADPRHL1Q8NDY3 354 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 PIK3C3Q8NEB9 887 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 OR5J2Q8NH18 312 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 LRMDAQ9H2I8 198 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 MRPL39Q9NYK5 338 aaKnown RBP15.75■□□□□ 0.11
CLN3-247ENST00000636351 ZNF229Q9UJW7 825 aa15.75■□□□□ 0.11
CLN3-247ENST00000636351 C11orf98E9PRG8 122 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 ACOT8O14734 319 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 FZD7O75084 574 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 IGHV3-9P01782 118 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 ADORA3P0DMS8 318 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 IFI30P13284 250 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 FUT4P22083 530 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 AHCYP23526 432 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 SMIM11AP58511 58 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 CHRNB3Q05901 458 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 FAM27E3Q08E93 113 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 FAM98BQ52LJ0 330 aaKnown RBP15.74■□□□□ 0.11
CLN3-247ENST00000636351 PGM2L1Q6PCE3 622 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 CLEC9AQ6UXN8 241 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 AAED1Q7RTV5 226 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 SLC46A3Q7Z3Q1 461 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 UEVLDQ8IX04 471 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 NRMQ8IXM6 262 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 OR52J3Q8NH60 311 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 ACOT11Q8WXI4 607 aaPredicted RBP15.74■□□□□ 0.11
CLN3-247ENST00000636351 POP5Q969H6 163 aaKnown RBP15.74■□□□□ 0.11
CLN3-247ENST00000636351 OXGR1Q96P68 337 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 ZNF385AQ96PM9 386 aaKnown RBP15.74■□□□□ 0.11
CLN3-247ENST00000636351 ZNF347Q96SE7 839 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 ANKRD19PQ9H560 264 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 IL1RAPQ9NPH3 570 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 C20orf141Q9NUB4 165 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 PARPBPQ9NWS1 579 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 ELOVL5Q9NYP7 299 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 PRSS50Q9UI38 385 aa15.74■□□□□ 0.11
CLN3-247ENST00000636351 NSD1Q96L73 2696 aaPredicted RBP15.73■□□□□ 0.11
CLN3-247ENST00000636351 A0A1W2PRQ8 180 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 PLPP3O14495 311 aa15.73■□□□□ 0.11
CLN3-247ENST00000636351 CASKO14936 926 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms