RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 HIST1H2ACQ93077 130 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 PTP4A1Q93096 173 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 RFKQ969G6 155 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 KCTD12Q96CX2 325 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 GPX7Q96SL4 187 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 NDEL1Q9GZM8 345 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 H2AFY2Q9P0M6 372 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ABI3Q9P2A4 366 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ERRFI1Q9UJM3 462 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ZNF229Q9UJW7 825 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ADAM18Q9Y3Q7 739 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 CREBBPQ92793 2442 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 FTCDNL1E5RQL4 147 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 G3V3Y1 287 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 M0R3G1 203 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 IMPA2O14732 288 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 OR2T1O43869 369 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 SNX4O95219 450 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 AHSA1O95433 338 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 P04436 131 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 LCKP06239 509 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ZNF3P17036 446 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 HK1P19367 917 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 CYB561P49447 251 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 CDH11P55287 796 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 OC90Q02509 493 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 TBCEQ15813 527 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 PRR30Q53SZ7 412 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ABHD17BQ5VST6 288 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 C1orf140Q5VVS0 124 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 CXXC5Q7LFL8 322 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 FAM122BQ7Z309 247 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 CPOQ8IVL8 374 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 BEST3Q8N1M1 668 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 GALNT16Q8N428 558 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 CISD2Q8N5K1 135 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 KISS1RQ969F8 398 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 RELTQ969Z4 430 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 OTULINQ96BN8 352 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 DDIT4LQ96D03 193 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 DGCR14Q96DF8 476 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 C1GALT1C1Q96EU7 318 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ARL5BQ96KC2 179 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ERMAPQ96PL5 475 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 DDOQ99489 341 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 NAA50Q9GZZ1 169 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 MED20Q9H944 212 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 NRIP3Q9NQ35 241 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 SACM1LQ9NTJ5 587 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 ASF1BQ9NVP2 202 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 MRPS18AQ9NVS2 196 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 STMN3Q9NZ72 180 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 CACNA1DQ01668 2161 aa8.55□□□□□ -1.04
PDLIM5-223ENST00000627587 A0A087WZY1 265 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 IRGMA1A4Y4 181 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 PRR23D1E9PI22 279 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ZNF208O43345 1280 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 CLDN1O95832 211 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 PTHP01270 115 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 RNF224P0DH78 156 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 PRR23D2P0DMB1 279 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 PAICSP22234 425 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 SLC2A5P22732 501 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ADH6P28332 368 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 AQP2P41181 271 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 EIF1P41567 113 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 MTNR1AP48039 350 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 TUBA3CQ13748 450 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 KLHL22Q53GT1 634 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ALG10Q5BKT4 473 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 SYT6Q5T7P8 510 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ZNF787Q6DD87 383 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 Q6ZS92 163 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 GID4Q8IVV7 300 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ST6GALNAC3Q8NDV1 305 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 PSD4Q8NDX1 1056 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 OR1J4Q8NGS1 313 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ZPLD1Q8TCW7 415 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 FCGR1BQ92637 280 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ZBTB8AQ96BR9 441 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 SLC25A36Q96CQ1 311 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 TMEM80Q96HE8 168 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 GNRHR2Q96P88 292 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 KATNB1Q9BVA0 655 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 CDCA4Q9BXL8 241 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ZNF552Q9H707 407 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 SERINC1Q9NRX5 453 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 DEPPQ9NTK1 212 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 TAS2R5Q9NYW4 299 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 LUZP4Q9P127 313 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 IER3IP1Q9Y5U9 82 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 SPIN1Q9Y657 262 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 COMMD3-BMI1R4GMX3 469 aa8.54□□□□□ -1.04
PDLIM5-223ENST00000627587 ZNF99A8MXY4 864 aaPredicted RBP8.53□□□□□ -1.04
PDLIM5-223ENST00000627587 ARPC3O15145 178 aa8.53□□□□□ -1.04
PDLIM5-223ENST00000627587 IDH3BO43837 385 aa8.53□□□□□ -1.04
PDLIM5-223ENST00000627587 FZD7O75084 574 aa8.53□□□□□ -1.04
PDLIM5-223ENST00000627587 TRIM3O75382 744 aaPredicted RBP8.53□□□□□ -1.04
PDLIM5-223ENST00000627587 APOL3O95236 402 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms