RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ADORA3P0DMS8 318 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 HLA-DOBP13765 273 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 IL1RL1Q01638 556 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 SPIBQ01892 262 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 PRKCDQ05655 676 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 CHRNB3Q05901 458 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 C1DQ13901 141 aaKnown RBP14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 FAM98BQ52LJ0 330 aaKnown RBP14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 FBXW9Q5XUX1 488 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 NHLRC1Q6VVB1 395 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 STAC2Q6ZMT1 411 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 HIST3H2AQ7L7L0 130 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 PXKQ7Z7A4 578 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 UEVLDQ8IX04 471 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 PIAS4Q8N2W9 510 aaPredicted RBP14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 OR52J3Q8NH60 311 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 HIST1H2ACQ93077 130 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 RAB3IPQ96QF0 476 aaPredicted RBP14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 FUZQ9BT04 418 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 NOX1Q9Y5S8 564 aa14.63□□□□□ -0.07
CCDC28A-202ENST00000611852 TUBAL3A6NHL2 446 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 HNRNPRO43390 633 aaKnown RBP14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 OR6A2O95222 327 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 GADD45GO95257 159 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 ADAP00813 363 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 MAKP20794 623 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 AHCYP23526 432 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 KIR2DL3P43628 341 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 CLDN17P56750 224 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 SMIM11AP58511 58 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 POU3F1Q03052 451 aaPredicted RBP14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 ZP4Q12836 540 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 P2RY6Q15077 328 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 SEC23BQ15437 767 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 RRM2BQ7LG56 351 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 NANOGNBQ7Z5D8 188 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 CXorf67Q86X51 503 aaPredicted RBP14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 ADGRG5Q8IZF4 528 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 CANT1Q8WVQ1 401 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 MALT1Q9UDY8 824 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 ALPK2Q86TB3 2170 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 CRYBG3Q68DQ2 2970 aa14.62□□□□□ -0.07
CCDC28A-202ENST00000611852 DHRS12A0PJE2 317 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 C11orf98E9PRG8 122 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 BLOC1S5-TXNDC5H3BN57 136 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 ZNF432O94892 652 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 TSPAN19P0C672 248 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 RAP2AP10114 183 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 PSMB1P20618 241 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 RRM2P31350 389 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SELENOPP49908 381 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 RPL18Q07020 188 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 TSPO2Q5TGU0 170 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 NIPAL3Q6P499 406 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SPATA24Q86W54 205 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 MEX3DQ86XN8 651 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 UBE2J2Q8N2K1 259 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 OR4K5Q8NGD3 323 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 LINC01560Q8TB33 94 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SLC24A3Q9HC58 644 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SLC7A10Q9NS82 523 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 CRIM1Q9NZV1 1036 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 RCE1Q9Y256 329 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 CENPEQ02224 2701 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 UNC79Q9P2D8 2635 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 TCRBV3S1A0A5B6 114 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SH3PXD2BA1X283 911 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 RNF13O43567 381 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SAGP10523 405 aaPredicted RBP14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 COX5AP20674 150 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 ITGADQ13349 1161 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SFRP5Q5T4F7 317 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 TMPRSS11FQ6ZWK6 438 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 CDK20Q8IZL9 346 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 ANKK1Q8NFD2 765 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 MARVELD3Q96A59 401 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 TXNDC15Q96J42 360 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 SLCO5A1Q9H2Y9 848 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 ASB6Q9NWX5 421 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 MED29Q9NX70 200 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 KCNN3Q9UGI6 736 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 AURKCQ9UQB9 309 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 GPR52Q9Y2T5 361 aa14.61□□□□□ -0.07
CCDC28A-202ENST00000611852 EFCAB9A8MZ26 197 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 PDLIM1O00151 329 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 CDC42EP2O14613 210 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 SERPINI2O75830 405 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 KRT36O76013 467 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 IGHV1-2P23083 117 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 AQP2P41181 271 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 GPR4P46093 362 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 LIMS1P48059 325 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 HMGA2P52926 109 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 RPS4XP62701 263 aaKnown RBP14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 FAPQ12884 760 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 FHL1Q13642 323 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 TSC22D1Q15714 1073 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 ANKRD34AQ69YU3 496 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 POMGNT2Q8NAT1 580 aa14.6□□□□□ -0.07
CCDC28A-202ENST00000611852 FAM46AQ96IP4 442 aaKnown RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms