RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 IL18BPO95998 194 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 GNAO1P09471 354 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 OSMP13725 252 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 IL11P20809 199 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 CTSSP25774 331 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 DPP4P27487 766 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 POU1F1P28069 291 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 OPRM1P35372 400 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 HTR3AP46098 478 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 CTBP2P56545 445 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 DSCR4P56555 118 aaPredicted RBP11.33□□□□□ -0.6
UPF1-208ENST00000600012 EGR4Q05215 589 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 NPRL3Q12980 569 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 KEAP1Q14145 624 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 TOMM20Q15388 145 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 DEFB113Q30KQ7 82 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 SLC25A53Q5H9E4 307 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 ADGRG3Q86Y34 549 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 PARP8Q8N3A8 854 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 ATP6V1C2Q8NEY4 427 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 MBD3L2Q8NHZ7 208 aaPredicted RBP11.33□□□□□ -0.6
UPF1-208ENST00000600012 TFAP2CQ92754 450 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 SGTBQ96EQ0 304 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 MRGPRX4Q96LA9 322 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 TRIB1Q96RU8 372 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 OR11A1Q9GZK7 315 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 Q9H521 79 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 EGLN3Q9H6Z9 239 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 SLC6A5Q9Y345 797 aa11.33□□□□□ -0.6
UPF1-208ENST00000600012 MED12LQ86YW9 2145 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 A0A087WZY1 265 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 UNC119BA6NIH7 251 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 EFCAB9A8MZ26 197 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 H0YAE9 185 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 H3BN98 237 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 EFNA2O43921 213 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 CBR3O75828 277 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 OR7A10O76100 309 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 ATE1O95260 518 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 CH25HO95992 272 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 SAGP10523 405 aaPredicted RBP11.32□□□□□ -0.6
UPF1-208ENST00000600012 BMP7P18075 431 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 GSTM3P21266 225 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 CHMP24386 653 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 APOBEC1P41238 236 aaKnown RBP11.32□□□□□ -0.6
UPF1-208ENST00000600012 TMEM236Q5W0B7 351 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 CD300LDQ6UXZ3 194 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 TMPRSS11FQ6ZWK6 438 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 SLC46A3Q7Z3Q1 461 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 CDK20Q8IZL9 346 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 C10orf53Q8N6V4 93 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 OR8D4Q8NGM9 314 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 ABTB1Q969K4 478 aaPredicted RBP11.32□□□□□ -0.6
UPF1-208ENST00000600012 KTI12Q96EK9 354 aaPredicted RBP11.32□□□□□ -0.6
UPF1-208ENST00000600012 WDYHV1Q96HA8 205 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 ZNF570Q96NI8 536 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 PLA2G12AQ9BZM1 189 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 SLC19A3Q9BZV2 496 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 GRIP2Q9C0E4 1043 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 GSX1Q9H4S2 264 aaPredicted RBP11.32□□□□□ -0.6
UPF1-208ENST00000600012 TMEM185BQ9H7F4 350 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 CALHM2Q9HA72 323 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 JKAMPQ9P055 326 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 CHRNA9Q9UGM1 479 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 LRCH1Q9Y2L9 728 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 PCDHGB5Q9Y5G0 923 aa11.32□□□□□ -0.6
UPF1-208ENST00000600012 TRAV27A0A087WT01 109 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 LOC100130705A0A1B0GUX0 176 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 CLCA1A8K7I4 914 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 A8MVM7 634 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 E9PQ18 207 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 SLC16A6O15403 523 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 DENRO43583 198 aaKnown RBP11.31□□□□□ -0.6
UPF1-208ENST00000600012 ZIC3O60481 467 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 ACTL6AO96019 429 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 PEPDP12955 493 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 SRD5A2P31213 254 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 RPS5P46782 204 aaKnown RBP11.31□□□□□ -0.6
UPF1-208ENST00000600012 CRISP1P54107 249 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 TPD52P55327 224 aaPredicted RBP11.31□□□□□ -0.6
UPF1-208ENST00000600012 ESRRGP62508 458 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 LTBQ06643 244 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 COX10Q12887 443 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 ZNF74Q16587 644 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 WIPI1Q5MNZ9 446 aaPredicted RBP11.31□□□□□ -0.6
UPF1-208ENST00000600012 RAET1LQ5VY80 246 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 TTC23Q5W5X9 447 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 ZNF620Q6ZNG0 422 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 RASSF6Q6ZTQ3 369 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 YRDCQ86U90 279 aaKnown RBP11.31□□□□□ -0.6
UPF1-208ENST00000600012 BIVMQ86UB2 503 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 IQCF1Q8N6M8 205 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 LRRC17Q8N6Y2 441 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 FANK1Q8TC84 345 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 STK35Q8TDR2 534 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 ZBTB8AQ96BR9 441 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 ZFP3Q96NJ6 502 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 MOGAT1Q96PD6 335 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 PITX2Q99697 317 aa11.31□□□□□ -0.6
UPF1-208ENST00000600012 ANKRD60Q9BZ19 345 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms