RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 JKAMPQ9P055 326 aa12.75□□□□□ -0.37
VRK3-213ENST00000597215 AP4S1Q9Y587 144 aa12.75□□□□□ -0.37
VRK3-213ENST00000597215 NOX1Q9Y5S8 564 aa12.75□□□□□ -0.37
VRK3-213ENST00000597215 U3KQV3 271 aa12.75□□□□□ -0.37
VRK3-213ENST00000597215 LRRK2Q5S007 2527 aa12.75□□□□□ -0.37
VRK3-213ENST00000597215 NKX2-6A6NCS4 301 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 ERICH4A6NGS2 130 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 A8MXE2 369 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 C11orf98E9PRG8 122 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 BLOC1S5-TXNDC5H3BN57 136 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 CLOCKO15516 846 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 HNRNPRO43390 633 aaKnown RBP12.74□□□□□ -0.37
VRK3-213ENST00000597215 RNF13O43567 381 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 AKAP8O43823 692 aaKnown RBP12.74□□□□□ -0.37
VRK3-213ENST00000597215 E2F6O75461 281 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 TIPRLO75663 272 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 CCNB2O95067 398 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 HPRP00739 348 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 FCGR1AP12314 374 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 UQCRC1P31930 480 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 OR3A2P47893 321 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 POU3F1Q03052 451 aaPredicted RBP12.74□□□□□ -0.37
VRK3-213ENST00000597215 RPL18Q07020 188 aaKnown RBP12.74□□□□□ -0.37
VRK3-213ENST00000597215 FBXL19-AS1Q494R0 122 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 TFAP2EQ6VUC0 442 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 PXKQ7Z7A4 578 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 EPHX4Q8IUS5 362 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 ZNF100Q8IYN0 542 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 ANKK1Q8NFD2 765 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 ZNF385AQ96PM9 386 aaKnown RBP12.74□□□□□ -0.37
VRK3-213ENST00000597215 NDEL1Q9GZM8 345 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 DENND2DQ9H6A0 471 aaPredicted RBP12.74□□□□□ -0.37
VRK3-213ENST00000597215 TAS2R5Q9NYW4 299 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 HIF3AQ9Y2N7 669 aa12.74□□□□□ -0.37
VRK3-213ENST00000597215 KLF2Q9Y5W3 355 aaPredicted RBP12.74□□□□□ -0.37
VRK3-213ENST00000597215 CDC42EP2O14613 210 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 TRAF3IP2O43734 574 aaPredicted RBP12.73□□□□□ -0.37
VRK3-213ENST00000597215 TSPAN19P0C672 248 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 FPR3P25089 353 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 FASP25445 335 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 DNAJA1P31689 397 aaKnown RBP12.73□□□□□ -0.37
VRK3-213ENST00000597215 AQP2P41181 271 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 CLDN17P56750 224 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 RPS4XP62701 263 aaKnown RBP12.73□□□□□ -0.37
VRK3-213ENST00000597215 PPP1R8Q12972 351 aaKnown RBP12.73□□□□□ -0.37
VRK3-213ENST00000597215 TAF11Q15544 211 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 MICAQ29983 383 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 ZFP1Q6P2D0 407 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 BEND4Q6ZU67 534 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 AAED1Q7RTV5 226 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 ZER1Q7Z7L7 766 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 ZIC4Q8N9L1 334 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 ZNF610Q8N9Z0 462 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 OR9Q2Q8NGE9 314 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 OR13C2Q8NGS9 318 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 GNPDA2Q8TDQ7 276 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 APH1AQ96BI3 265 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 RBM24Q9BX46 236 aaKnown RBP12.73□□□□□ -0.37
VRK3-213ENST00000597215 FOXD3Q9UJU5 478 aaPredicted RBP12.73□□□□□ -0.37
VRK3-213ENST00000597215 RCE1Q9Y256 329 aa12.73□□□□□ -0.37
VRK3-213ENST00000597215 FREM1Q5H8C1 2179 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 TRAV27A0A087WT01 109 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 A0A1W2PRG6 482 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 UNC119BA6NIH7 251 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 KLF4O43474 513 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 SERPINI2O75830 405 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 HLA-DOBP13765 273 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 PRPS1P60891 318 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 TFF3Q07654 80 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 ATP6AP1Q15904 470 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 ZBED5Q49AG3 693 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 ALG10Q5BKT4 473 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 C1orf94Q6P1W5 598 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 PGBD2Q6P3X8 592 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 NIPAL3Q6P499 406 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 OR10G2Q8NGC3 310 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 OR51A7Q8NH64 312 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 MOSPD2Q8NHP6 518 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 GIPC3Q8TF64 312 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 PYDC1Q8WXC3 89 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 RNASE6Q93091 150 aaKnown RBP12.72□□□□□ -0.37
VRK3-213ENST00000597215 INIPQ9NRY2 104 aa12.72□□□□□ -0.37
VRK3-213ENST00000597215 HCFC1P51610 2035 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 FLNBO75369 2602 aaKnown RBP12.71□□□□□ -0.37
VRK3-213ENST00000597215 DOPEY2Q9Y3R5 2298 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 A1L4Q6 167 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 ARRDC5A6NEK1 342 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 OR6C65A6NJZ3 312 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 PRSS44E7EML9 344 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 CNOT4O95628 575 aaKnown RBP12.71□□□□□ -0.37
VRK3-213ENST00000597215 F13BP05160 661 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 IFNGR1P15260 489 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 NTF4P34130 210 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 GSSP48637 474 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 DAP3P51398 398 aaKnown RBP12.71□□□□□ -0.37
VRK3-213ENST00000597215 ARHGDIAP52565 204 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 IST1P53990 364 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 TSPAN31Q12999 210 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 FHL1Q13642 323 aa12.71□□□□□ -0.37
VRK3-213ENST00000597215 LAPTM4AQ15012 233 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms