RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 FMO3P31513 532 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 RAC3P60763 192 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 CSNK2A1P68400 391 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 PUDPQ08623 228 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 INAQ16352 499 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 SMN1Q16637 294 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 AADACL4Q5VUY2 407 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 VASNQ6EMK4 673 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 OR2V1Q8NHB1 315 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 ABTB1Q969K4 478 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 TSPAN32Q96QS1 320 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 SRXN1Q9BYN0 137 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 DEFB127Q9H1M4 99 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 PLSCR2Q9NRY7 297 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 B3GAT1Q9P2W7 334 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 KLHL21Q9UJP4 597 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 TUBD1Q9UJT1 453 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 ZNF346Q9UL40 294 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 B3GNT3Q9Y2A9 372 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 ADAM18Q9Y3Q7 739 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 ZGRF1Q86YA3 2104 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 TRGV5A0A0B4J1U4 118 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 SH3D21A4FU49 640 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 C11orf98E9PRG8 122 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 EIF1AYO14602 144 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 TFECO14948 347 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 RNF13O43567 381 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 EIF1BO60739 113 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 ENTPD6O75354 484 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 OR6A2O95222 327 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 HIST1H1CP16403 213 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 CRHBPP24387 322 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 SDHAP31040 664 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 PLEKHN1Q494U1 663 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 EMC4Q5J8M3 183 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 SLC35F1Q5T1Q4 408 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 MEDAGQ5VYS4 303 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 GPR139Q6DWJ6 353 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 ANKK1Q8NFD2 765 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 ZNF519Q8TB69 540 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 RASD2Q96D21 266 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 PLEKHA8Q96JA3 519 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 Q96M85 177 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 ZNF582Q96NG8 517 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 TXNIPQ9H3M7 391 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 PRORYQ9H606 182 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 HINT3Q9NQE9 182 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 CLN6Q9NWW5 311 aa13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 RP1L1Q8IWN7 2480 aaPredicted RBP13.19□□□□□ -0.3
SHKBP1-211ENST00000595945 ZZEF1O43149 2961 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 ITPR1Q14643 2758 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 TEX13CA0A0J9YWL9 993 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 RIIAD1A6NNX1 92 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 SMAD9O15198 467 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 SEC14L5O43304 696 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 XPNPEP2O43895 674 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 CXCL13O43927 109 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 RAMP1O60894 148 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 IFNGP01579 166 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 HLA-DOBP13765 273 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 GABARAPL2P60520 117 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 RPL27P61353 136 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 CSNK2BP67870 215 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 ITGADQ13349 1161 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 ACKR1Q16570 336 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 MESTQ5EB52 335 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 PDSS1Q5T2R2 415 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 HBMQ6B0K9 141 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 CXXC5Q7LFL8 322 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 BCDIN3DQ7Z5W3 292 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 PXKQ7Z7A4 578 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 CPOQ8IVL8 374 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 SLC37A3Q8NCC5 494 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 LSM14AQ8ND56 463 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 NPEPL1Q8NDH3 523 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 BPIFB6Q8NFQ5 453 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 OR10D3Q8NH80 312 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 C9orf43Q8TAL5 461 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 PTP4A1Q93096 173 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 PNPLA2Q96AD5 504 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 CRELD1Q96HD1 420 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 LRR1Q96L50 414 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 Q96MT0 163 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 OXGR1Q96P68 337 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 NAA11Q9BSU3 229 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 NMNAT2Q9BZQ4 307 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 DUSP21Q9H596 190 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 FKBP14Q9NWM8 211 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 DNAJC27Q9NZQ0 273 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 SPRR3Q9UBC9 169 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 RASD1Q9Y272 281 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 GPR52Q9Y2T5 361 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 FREM1Q5H8C1 2179 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 USP24Q9UPU5 2620 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 DOCK7Q96N67 2140 aa13.18□□□□□ -0.3
SHKBP1-211ENST00000595945 TRIM64CA6NLI5 447 aa13.17□□□□□ -0.3
SHKBP1-211ENST00000595945 PRODHO43272 600 aa13.17□□□□□ -0.3
SHKBP1-211ENST00000595945 TRAF3IP2O43734 574 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-211ENST00000595945 SMNDC1O75940 238 aaKnown RBP eCLIP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms