RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	MCOLN3	Q8TDD5	553 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SMAP2	Q8WU79	429 aa	Predicted RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	RAB2B	Q8WUD1	216 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C10orf35	Q96D05	121 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	RAB3C	Q96E17	227 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	PRAC1	Q96KF2	57 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C7orf34	Q96L11	122 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF597	Q96LX8	424 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C12orf66	Q96MD2	445 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ALKBH3	Q96Q83	286 aa	Predicted RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SLC38A2	Q96QD8	506 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SERPINI1	Q99574	410 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SLC6A7	Q99884	636 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C9orf16	Q9BUW7	83 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C1QTNF4	Q9BXJ3	329 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C6orf62	Q9GZU0	229 aa	Predicted RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	BLZF1	Q9H2G9	400 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	PPA2	Q9H2U2	334 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595		Q9HAA7	133 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	MRM3	Q9HC36	420 aa	Known RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	IL1RAP	Q9NPH3	570 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	SLC2A8	Q9NY64	477 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	B3GNT2	Q9NY97	397 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	EIF3K	Q9UBQ5	218 aa	Known RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595	KLK11	Q9UBX7	282 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ENOPH1	Q9UHY7	261 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF229	Q9UJW7	825 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	RNF11	Q9Y3C5	154 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	UGT2A1	Q9Y4X1	527 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	NPTN	Q9Y639	398 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	4.14	□□□□□ -1.75
SS18-223	ENST00000583595		A0A1B0GUL6	1792 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	NID2	Q14112	1375 aa		4.14	□□□□□ -1.75
SS18-223	ENST00000583595	C10orf71	Q711Q0	1435 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595		A0A1B0GTQ1	180 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595		A0A1W2PRG6	482 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SAGE2P	A6NJ88	616 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	LEUTX	A8MZ59	168 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF487	B1APH4	448 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	TYROBP	O43914	113 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	KHDRBS3	O75525	346 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SNAP29	O95721	258 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PTTG1	O95997	202 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	F10	P00742	488 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	CA1	P00915	261 aa	Predicted RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	APOC1	P02654	83 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SERPINA6	P08185	405 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	H2AFZ	P0C0S5	128 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	HSPD1	P10809	573 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	MYL2	P10916	166 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	RALB	P11234	206 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	POU2F1	P14859	743 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SELE	P16581	610 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	AOC1	P19801	751 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	TBXA2R	P21731	343 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	MMP11	P24347	488 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	CASP1	P29466	404 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	CD40LG	P29965	261 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PPP2R1B	P30154	601 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GPR183	P32249	361 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	COIL	P38432	576 aa	Predicted RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	OPRL1	P41146	370 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GNPDA1	P46926	289 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SERPINB10	P48595	397 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	POU3F4	P49335	361 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	RGS19	P49795	217 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GDI2	P50395	445 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	EIF3E	P60228	445 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	RAB14	P61106	215 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	BNIP2	Q12982	314 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GK3P	Q14409	553 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GANAB	Q14697	944 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SLC1A5	Q15758	541 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	FAM189A2	Q15884	450 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF181	Q2M3W8	571 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GTDC1	Q4AE62	458 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	C6orf226	Q5I0X4	101 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SPANXN2	Q5MJ10	180 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	BRMS1L	Q5PSV4	323 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	GPR107	Q5VW38	600 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	LIPN	Q5VXI9	398 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	RUSC1-AS1	Q66K80	236 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PRR5L	Q6MZQ0	368 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	FAM71F2	Q6NXP2	309 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	RNASEK	Q6P5S7	137 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	FOXL2NB	Q6ZUU3	175 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	SH2D5	Q6ZV89	423 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	H2AFV	Q71UI9	128 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	RBM23	Q86U06	439 aa	Known RBP	4.13	□□□□□ -1.75
SS18-223	ENST00000583595	TMEM17	Q86X19	198 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	HOGA1	Q86XE5	327 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	PLCZ1	Q86YW0	608 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	BBS7	Q8IWZ6	715 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	C12orf56	Q8IXR9	622 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	MICU2	Q8IYU8	434 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	CADM2	Q8N3J6	435 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	FGFRL1	Q8N441	504 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	CLDN19	Q8N6F1	224 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	KLHDC9	Q8NEP7	349 aa		4.13	□□□□□ -1.75
SS18-223	ENST00000583595	OR9Q2	Q8NGE9	314 aa		4.13	□□□□□ -1.75

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