RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PRR20DP86480 221 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 PRR20BP86481 221 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 PRR20AP86496 221 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 SELENBP1Q13228 472 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TMED1Q13445 227 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 KRR1Q13601 381 aaKnown RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 MFSD13AQ14CX5 517 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 RTP5Q14D33 572 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 MED22Q15528 200 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 ARMCX4Q5H9R4 360 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 ARMC4Q5T2S8 1044 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 GPR139Q6DWJ6 353 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 C3orf33Q6P1S2 294 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TUBA3EQ6PEY2 450 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 LINC00696Q6ZRV3 163 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 SLC16A12Q6ZSM3 486 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 ANKRD13BQ86YJ7 626 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 GTPBP8Q8N3Z3 284 aaPredicted RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 GALNT16Q8N428 558 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 NANOGP1Q8N7R0 232 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TMEM99Q8N816 258 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 CLEC1AQ8NC01 280 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 COG8Q96MW5 612 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 UBL7Q96S82 380 aaPredicted RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 NMNAT3Q96T66 252 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TEAD3Q99594 435 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 DOK1Q99704 481 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 UTP23Q9BRU9 249 aaKnown RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 MND1Q9BWT6 205 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 CHST11Q9NPF2 352 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 DEPPQ9NTK1 212 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 CHCHD3Q9NX63 227 aaKnown RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 PLA2G3Q9NZ20 509 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 LRFN1Q9P244 771 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TNFRSF10DQ9UBN6 386 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 ZNF346Q9UL40 294 aaKnown RBP9.47□□□□□ -0.89
SS18-217ENST00000580958 CORINQ9Y5Q5 1042 aa9.47□□□□□ -0.89
SS18-217ENST00000580958 TNRC6AQ8NDV7 1962 aaKnown RBP9.46□□□□□ -0.89
SS18-217ENST00000580958 A0A1W2PNR3 127 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 PINLYPA6NC86 204 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 LRRC3CA6NJW4 275 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 A6NL46 340 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 H7C1C5 153 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 J3QRE1 110 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 GPR37O15354 613 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 ZIC3O60481 467 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 CBR3O75828 277 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 ATE1O95260 518 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 WDPCPO95876 746 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 IGHA1P01876 353 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 MRPL3P09001 348 aaKnown RBP9.46□□□□□ -0.9
SS18-217ENST00000580958 LIMS3P0CW19 117 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 LIMS4P0CW20 117 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 CD36P16671 472 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 SPI1P17947 270 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 WT1P19544 449 aaPredicted RBP9.46□□□□□ -0.9
SS18-217ENST00000580958 AHCYP23526 432 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 PCSK6P29122 969 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 SFTPDP35247 375 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 ATP6V1E1P36543 226 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 OR2B6P58173 313 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 GPR85P60893 370 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 LCN6P62502 163 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 LGALS3BPQ08380 585 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 C19orf57Q0VDD7 668 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 ZP4Q12836 540 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 MYBPHQ13203 477 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 TOMM20Q15388 145 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 OR1C1Q15619 314 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 TSTQ16762 297 aaKnown RBP9.46□□□□□ -0.9
SS18-217ENST00000580958 RSPO4Q2I0M5 234 aaPredicted RBP9.46□□□□□ -0.9
SS18-217ENST00000580958 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.46□□□□□ -0.9
SS18-217ENST00000580958 GLYR1Q49A26 553 aaPredicted RBP9.46□□□□□ -0.9
SS18-217ENST00000580958 MESTQ5EB52 335 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 EMC4Q5J8M3 183 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 LCN1P1Q5VSP4 162 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 RAET1LQ5VY80 246 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 SPINK14Q6IE38 97 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 LHFPL3Q86UP9 236 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 KDM8Q8N371 416 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 EXD3Q8N9H8 876 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 SCAIQ8N9R8 606 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 PROKR2Q8NFJ6 384 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 OR51L1Q8NGJ5 315 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 RAB2BQ8WUD1 216 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 SLC25A43Q8WUT9 341 aaPredicted RBP9.46□□□□□ -0.9
SS18-217ENST00000580958 ZMYND19Q96E35 227 aaPredicted RBP9.46□□□□□ -0.9
SS18-217ENST00000580958 C5orf34Q96MH7 638 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 OPALINQ96PE5 141 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 SIGLEC12Q96PQ1 595 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 OR5B2Q96R09 309 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 NMNAT2Q9BZQ4 307 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 ASB6Q9NWX5 421 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 ALKBH4Q9NXW9 302 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 PTTG2Q9NZH5 202 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 GRHPRQ9UBQ7 328 aa9.46□□□□□ -0.9
SS18-217ENST00000580958 TMEM129A0AVI4 362 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 DCDC2BA2VCK2 349 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 OR2M5A3KFT3 312 aa9.45□□□□□ -0.9
SS18-217ENST00000580958 TRABD2BA6NFA1 517 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms