RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MS4A18Q3C1V0 323 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 Q5PR19 223 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 LINGO2Q7L985 606 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 MPP4Q96JB8 637 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 CXorf56Q9H5V9 222 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 EFCAB1Q9HAE3 211 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 LAMP3Q9UQV4 416 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 MTORP42345 2549 aa20.95■□□□□ 0.94
SHMT1-206ENST00000579558 ARID1AO14497 2285 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 SHISA9B4DS77 424 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 PTAFRP25105 342 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 LSP1P33241 339 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 CDH11P55287 796 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 PRPS1P60891 318 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 SLC25A3Q00325 362 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 ROR2Q01974 943 aaKnown RBP20.94■□□□□ 0.94
SHMT1-206ENST00000579558 PUDPQ08623 228 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 HIKESHIQ53FT3 197 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 CYBRD1Q53TN4 286 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 HMBOX1Q6NT76 420 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 DEF8Q6ZN54 512 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 SLC15A3Q8IY34 581 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 PIAS4Q8N2W9 510 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-206ENST00000579558 OR1K1Q8NGR3 316 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 GSX2Q9BZM3 304 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 MGAT4BQ9UQ53 548 aa20.94■□□□□ 0.94
SHMT1-206ENST00000579558 MAGED1Q9Y5V3 778 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-206ENST00000579558 KPNA4O00629 521 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 SHOX2O60902 331 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 TMCC2O75069 709 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 WNT11O96014 354 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 HLA-DOBP13765 273 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 DRD4P21917 467 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 CD40P25942 277 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 PTH2RP49190 550 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 NUDT2P50583 147 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 SLC7A2P52569 658 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 TAS2R41P59536 307 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 RPS4XP62701 263 aaKnown RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 POU3F1Q03052 451 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 LIPEQ05469 1076 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 C1QTNF12Q5T7M4 302 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 CPLX4Q7Z7G2 160 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 GPR137CQ8N3F9 429 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 OR5J2Q8NH18 312 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 SMAP2Q8WU79 429 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 TPD52L3Q96J77 140 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 RADILQ96JH8 1075 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 OR2M2Q96R28 347 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 HOPXQ9BPY8 73 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 MYLK2Q9H1R3 596 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 CISD1Q9NZ45 108 aaKnown RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 GMPR2Q9P2T1 348 aaKnown RBP20.93■□□□□ 0.94
SHMT1-206ENST00000579558 NOX1Q9Y5S8 564 aa20.93■□□□□ 0.94
SHMT1-206ENST00000579558 PLPP3O14495 311 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 SNX3O60493 162 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 CH25HO95992 272 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 AHCYP23526 432 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 OR1E2P47887 323 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 GYS2P54840 703 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 SPOCK1Q08629 439 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 ZNF74Q16587 644 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 TBRG1Q3YBR2 411 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 SLC22A25Q6T423 547 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 HACD2Q6Y1H2 254 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 PIK3C3Q8NEB9 887 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 CMTM5Q96DZ9 223 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 BOD1Q96IK1 185 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 PRSS27Q9BQR3 290 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 ZNF426Q9BUY5 554 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 SLC19A3Q9BZV2 496 aa20.92■□□□□ 0.94
SHMT1-206ENST00000579558 POLR2J2Q9GZM3 115 aaKnown RBP20.92■□□□□ 0.94
SHMT1-206ENST00000579558 POLR2J3Q9H1A7 115 aaKnown RBP20.92■□□□□ 0.94
SHMT1-206ENST00000579558 GMNCA6NCL1 334 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 NME4O00746 187 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 OR6A2O95222 327 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 SOD3P08294 240 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 DANCRP0C864 163 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 ADORA3P0DMS8 318 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 SH3BGRP55822 239 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-206ENST00000579558 GNGT1P63211 74 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 CARD17Q5XLA6 110 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 C8orf82Q6P1X6 216 aaPredicted RBP20.91■□□□□ 0.94
SHMT1-206ENST00000579558 YTHDF3Q7Z739 585 aaKnown RBP20.91■□□□□ 0.94
SHMT1-206ENST00000579558 TMEM123Q8N131 208 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 EMC6Q9BV81 110 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 FKRPQ9H9S5 495 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 GPR35Q9HC97 309 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 OBP2BQ9NPH6 170 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 NANSQ9NR45 359 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 MED29Q9NX70 200 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 POU2F3Q9UKI9 436 aa20.91■□□□□ 0.94
SHMT1-206ENST00000579558 C11orf98E9PRG8 122 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 RPL36A-HNRNPH2H7BZ11 118 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 GSTA4O15217 222 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 SERPINI2O75830 405 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 OR5F1O95221 314 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 PAX1P15863 534 aa20.9■□□□□ 0.94
SHMT1-206ENST00000579558 UBE2NP61088 152 aaKnown RBP20.9■□□□□ 0.94
SHMT1-206ENST00000579558 SELENOWP63302 87 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms