RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PTNP21246 168 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 RPL4P36578 427 aaKnown RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 ZNF41P51814 821 aaPredicted RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 NUDT6P53370 316 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 PRPS1P60891 318 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 PLGLB1Q02325 96 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 PMS2P3Q13401 168 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 SNTA1Q13424 505 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 RAB39AQ14964 217 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 TMEM201Q5SNT2 666 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 LAIR2Q6ISS4 152 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 SLC30A6Q6NXT4 461 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ARHGAP11AQ6P4F7 1023 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 APOOLQ6UXV4 268 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 GRINAQ7Z429 371 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ATG4DQ86TL0 474 aaPredicted RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 MEX3DQ86XN8 651 aaKnown RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 CCDC103Q8IW40 242 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 TMEM156Q8N614 296 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 OR13C2Q8NGS9 318 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 OR51A7Q8NH64 312 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ZNF420Q8TAQ5 688 aaPredicted RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 ST8SIA1Q92185 356 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 HGDQ93099 445 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 SPACA9Q96E40 222 aaPredicted RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 ARSGQ96EG1 525 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 LRR1Q96L50 414 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 RASL10BQ96S79 203 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 SECISBP2Q96T21 854 aaKnown RBP9.15□□□□□ -0.94
SS18-207ENST00000577636 PLA2G12AQ9BZM1 189 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 UBQLN3Q9H347 655 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 PTGES2Q9H7Z7 377 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 AMBNQ9NP70 447 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 C20orf141Q9NUB4 165 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ALKBH4Q9NXW9 302 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 AASSQ9UDR5 926 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 ST6GALNAC2Q9UJ37 374 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 NF1P21359 2839 aa9.15□□□□□ -0.94
SS18-207ENST00000577636 INTS1Q8N201 2190 aaKnown RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 TMEM200CA6NKL6 621 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 FAM166BA8MTA8 275 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ZNF701M0R085 212 aaPredicted RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 M0R129 80 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 CDC42EP2O14613 210 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 SURF4O15260 269 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 PRODHO43272 600 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 OIP5O43482 229 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 PRKYO43930 277 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ADAM11O75078 769 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 TRMUO75648 421 aaKnown RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 OR7A10O76100 309 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 NTN1O95631 604 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 FADS2O95864 444 aaKnown RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 CH25HO95992 272 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 MT-ND2P03891 347 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ZNF3P17036 446 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 MYL12AP19105 171 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 HK1P19367 917 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 DNASE1P24855 282 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ATP6V1E1P36543 226 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 MAP2K6P52564 334 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 PPIAP62937 165 aaKnown RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 EMX1Q04741 257 aaPredicted RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 PIGFQ07326 219 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ST3GAL4Q11206 333 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 C1DQ13901 141 aaKnown RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 QPRTQ15274 297 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 NTRK2Q16620 822 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 GXYLT1Q4G148 440 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ACSM5Q6NUN0 579 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 C16orf47Q6ZP98 133 aaPredicted RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 MDGA2Q7Z553 956 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 NANOGNBQ7Z5D8 188 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 CLVS1Q8IUQ0 354 aaPredicted RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 GID4Q8IVV7 300 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 OR8D4Q8NGM9 314 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 GGHQ92820 318 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 NINJ1Q92982 152 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 MUL1Q969V5 352 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 OTULINQ96BN8 352 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 DTNBP1Q96EV8 351 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 TMEM80Q96HE8 168 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ADAM19Q9H013 955 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 CXXC4Q9H2H0 198 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 FN3KQ9H479 309 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 SLC24A3Q9HC58 644 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 MEPEQ9NQ76 525 aaPredicted RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 NANSQ9NR45 359 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 SERINC1Q9NRX5 453 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 DNAJC27Q9NZQ0 273 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ERGIC3Q9Y282 383 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 SIGLEC7Q9Y286 467 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 SLC6A5Q9Y345 797 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 SPIN1Q9Y657 262 aaPredicted RBP9.14□□□□□ -0.95
SS18-207ENST00000577636 SPG11Q96JI7 2443 aa9.14□□□□□ -0.95
SS18-207ENST00000577636 ZNF469Q96JG9 3925 aaPredicted RBP9.13□□□□□ -0.95
SS18-207ENST00000577636 TRAV36DV7A0A075B6V5 113 aa9.13□□□□□ -0.95
SS18-207ENST00000577636 TRAV27A0A087WT01 109 aa9.13□□□□□ -0.95
SS18-207ENST00000577636 TMED7-TICAM2A0A0A6YYA0 188 aa9.13□□□□□ -0.95
SS18-207ENST00000577636 A8MVM7 634 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms