RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TYW3Q6IPR3 259 aaKnown RBP9.97□□□□□ -0.81
CLK3-222ENST00000568232 USP51Q70EK9 711 aa9.97□□□□□ -0.81
CLK3-222ENST00000568232 SLC22A9Q8IVM8 553 aa9.97□□□□□ -0.81
CLK3-222ENST00000568232 DCAKDQ8WVC6 231 aa9.97□□□□□ -0.81
CLK3-222ENST00000568232 GTF3AQ92664 365 aaKnown RBP9.97□□□□□ -0.81
CLK3-222ENST00000568232 MTERF3Q96E29 417 aa9.97□□□□□ -0.81
CLK3-222ENST00000568232 METTL2AQ96IZ6 378 aaKnown RBP9.97□□□□□ -0.81
CLK3-222ENST00000568232 HINT3Q9NQE9 182 aaKnown RBP9.97□□□□□ -0.81
CLK3-222ENST00000568232 ATP6V1HQ9UI12 483 aa9.97□□□□□ -0.81
CLK3-222ENST00000568232 PURGQ9UJV8 347 aaKnown RBP9.97□□□□□ -0.81
CLK3-222ENST00000568232 ZNF346Q9UL40 294 aaKnown RBP9.97□□□□□ -0.81
CLK3-222ENST00000568232 ISPDA4D126 451 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 POC1B-GALNT4F8VUJ3 575 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 SLC28A1O00337 649 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 CFLARO15519 480 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 TRAF3IP2O43734 574 aaPredicted RBP9.96□□□□□ -0.82
CLK3-222ENST00000568232 CHRM4P08173 479 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 SELEP16581 610 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 LORP23490 312 aaPredicted RBP9.96□□□□□ -0.82
CLK3-222ENST00000568232 PHBP35232 272 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 SOAT1P35610 550 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 SERPINB9P50453 376 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 KCNJ10P78508 379 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 GALK2Q01415 458 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 C2orf54Q08AI8 447 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 TAF9Q16594 264 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 TSTQ16762 297 aaKnown RBP9.96□□□□□ -0.82
CLK3-222ENST00000568232 GSG1Q2KHT4 349 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 GALNTL6Q49A17 601 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 PHYHD1Q5SRE7 291 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 PRAMEF8Q5VWM4 474 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 PRAMEF7Q5VXH5 474 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 AP1ARQ63HQ0 302 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 TMEM154Q6P9G4 183 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 C16orf62Q7Z3J2 963 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 C6orf120Q7Z4R8 191 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 R3HCC1LQ7Z5L2 792 aaKnown RBP9.96□□□□□ -0.82
CLK3-222ENST00000568232 OR4F5Q8NH21 305 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 SFXN5Q8TD22 340 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 RAB1CQ92928 201 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 EXOSC3Q9NQT5 275 aaKnown RBP9.96□□□□□ -0.82
CLK3-222ENST00000568232 C1RLQ9NZP8 487 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 UTP11Q9Y3A2 253 aaKnown RBP9.96□□□□□ -0.82
CLK3-222ENST00000568232 FIS1Q9Y3D6 152 aa9.96□□□□□ -0.82
CLK3-222ENST00000568232 PPIAL4EA0A075B759 164 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 PPIAL4CA0A0B4J2A2 164 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 CLPSL1A2RUU4 121 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 PPIAL4DF5H284 164 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 DYNC1I1O14576 645 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 TPD52L2O43399 206 aaKnown RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 AK1P00568 194 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 NGFP01138 241 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 LINC00032P0C843 101 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 PPIAL4FP0DN26 164 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 UROSP10746 265 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 PTDSS1P48651 473 aaKnown RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 AQP5P55064 265 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 WDR4P57081 412 aaKnown RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 RPS23P62266 143 aaKnown RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 ETF1P62495 437 aaKnown RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 HBA1P69905 142 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 HFEQ30201 348 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 FAM153CQ494X1 144 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 ZNF362Q5T0B9 420 aaPredicted RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 GPR137CQ8N3F9 429 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 NOA1Q8NC60 698 aaKnown RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 ST7LQ8TDW4 575 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 CCL17Q92583 94 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 TIMD4Q96H15 378 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 TAPBPLQ9BX59 468 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 RSPO3Q9BXY4 272 aaPredicted RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 OR51I1Q9H343 314 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 TUBB1Q9H4B7 451 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.95□□□□□ -0.82
CLK3-222ENST00000568232 DECR2Q9NUI1 292 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 GIMAP2Q9UG22 337 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 WDR45Q9Y484 360 aa9.95□□□□□ -0.82
CLK3-222ENST00000568232 COL7A1Q02388 2944 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 DSPPQ9NZW4 1301 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 DUXAA6NLW8 204 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 ZNF99A8MXY4 864 aaPredicted RBP9.94□□□□□ -0.82
CLK3-222ENST00000568232 LSM1O15116 133 aaKnown RBP9.94□□□□□ -0.82
CLK3-222ENST00000568232 SLC43A1O75387 559 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 FOXH1O75593 365 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 VAMP5O95183 116 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 CRYBA1P05813 215 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 FAM157BP0CG42 384 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 OR12D1P0DN82 309 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 MAKP20794 623 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 CXCR1P25024 350 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 HPCAL1P37235 193 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 MTNR1AP48039 350 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 GIPRP48546 466 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 ERVS71-1P61550 626 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 SEC61A1P61619 476 aaKnown RBP9.94□□□□□ -0.82
CLK3-222ENST00000568232 TEKQ02763 1124 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 FUT5Q11128 374 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 HLXQ14774 488 aaPredicted RBP9.94□□□□□ -0.82
CLK3-222ENST00000568232 FAM189A2Q15884 450 aa9.94□□□□□ -0.82
CLK3-222ENST00000568232 PCGF3Q3KNV8 242 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms