RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 HSF2Q03933 536 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 CCDC58Q4VC31 144 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 EMC4Q5J8M3 183 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 HIST3H2AQ7L7L0 130 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 SYT9Q86SS6 491 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 TIGD4Q8IY51 512 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 OR6V1Q8N148 313 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 OR4D9Q8NGE8 314 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 RPS4Y2Q8TD47 263 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 HIST1H2ACQ93077 130 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 INIPQ9NRY2 104 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 CYSLTR2Q9NS75 346 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 EXTL2Q9UBQ6 330 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 MOKQ9UQ07 419 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 CCDC163A0A0D9SF12 145 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 TMEM72A0PK05 275 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 NPIPB7O75200 414 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 SCRG1O75711 98 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 PDGFBP01127 241 aaPredicted RBP18.37■□□□□ 0.53
CLN3-230ENST00000568076 HTR3AP46098 478 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 MAMSTRQ6ZN01 415 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 TRILQ7L0X0 811 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 SLC16A9Q7RTY1 509 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 ADGRG3Q86Y34 549 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 CEP76Q8TAP6 659 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 DUSP19Q8WTR2 217 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 OR14A2Q96R54 314 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 SMAD5Q99717 465 aaKnown RBP18.37■□□□□ 0.53
CLN3-230ENST00000568076 NPFFR2Q9Y5X5 522 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 TRAV1-2A0A0B4J238 106 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 A0A0G2JMP0 313 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 A0A0X1KG70 313 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 C19orf67A6NJJ6 358 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 B4DXG7 233 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 SUSD5O60279 629 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 HEXBP07686 556 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 UCHL1P09936 223 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 RAB3BP20337 219 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 NANOS3P60323 173 aaKnown RBP18.37■□□□□ 0.53
CLN3-230ENST00000568076 CEP78Q5JTW2 689 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 LRRC28Q86X40 367 aaPredicted RBP18.37■□□□□ 0.53
CLN3-230ENST00000568076 RAB43Q86YS6 212 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 OR4M2Q8NGB6 313 aa18.37■□□□□ 0.53
CLN3-230ENST00000568076 THAP3Q8WTV1 239 aaPredicted RBP18.37■□□□□ 0.53
CLN3-230ENST00000568076 TNRC6BQ9UPQ9 1833 aaKnown RBP18.37■□□□□ 0.53
CLN3-230ENST00000568076 A0A087WV48 116 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 TMED7-TICAM2A0A0A6YYA0 188 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 TVP23AA6NH52 213 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 TFECO14948 347 aaPredicted RBP18.36■□□□□ 0.53
CLN3-230ENST00000568076 TDGF1P13385 188 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 KIR2DL3P43628 341 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 POLR2HP52434 150 aaKnown RBP18.36■□□□□ 0.53
CLN3-230ENST00000568076 TRIQKQ629K1 86 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 ZNF385CQ66K41 422 aaPredicted RBP18.36■□□□□ 0.53
CLN3-230ENST00000568076 PAMR1Q6UXH9 720 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 RDH10Q8IZV5 341 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 SAMD12Q8N8I0 201 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 DTX3Q8N9I9 347 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 OR4M1Q8NGD0 313 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 MAFAQ8NHW3 353 aaPredicted RBP18.36■□□□□ 0.53
CLN3-230ENST00000568076 SLC25A36Q96CQ1 311 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 MRPL48Q96GC5 212 aaKnown RBP18.36■□□□□ 0.53
CLN3-230ENST00000568076 CCDC74BQ96LY2 380 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 SYNDIG1Q9H7V2 258 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 TMED7Q9Y3B3 224 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 PI4KAP42356 2102 aa18.36■□□□□ 0.53
CLN3-230ENST00000568076 COL6A3P12111 3177 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 C11orf98E9PRG8 122 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 ALOX12BO75342 701 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 SLC25A12O75746 678 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 FBXW4P57775 412 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 GPR139Q6DWJ6 353 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 UNQ9370/PRO34162Q6UXP9 181 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 CDC20BQ86Y33 519 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 TRMT10AQ8TBZ6 339 aaKnown RBP18.35■□□□□ 0.53
CLN3-230ENST00000568076 RELTQ969Z4 430 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 KCNJ15Q99712 375 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 WDR77Q9BQA1 342 aaPredicted RBP18.35■□□□□ 0.53
CLN3-230ENST00000568076 IER2Q9BTL4 223 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 SYT4Q9H2B2 425 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 TAS2R10Q9NYW0 307 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 NPAP1Q9NZP6 1156 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 RARRES3Q9UL19 164 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 A0A1B0GVC2 190 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 C2orf72A6NCS6 295 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 A6NIN4 97 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 TMEM200CA6NKL6 621 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 GATBO75879 557 aaKnown RBP18.35■□□□□ 0.53
CLN3-230ENST00000568076 GPANK1O95872 356 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 DCDP81605 110 aaKnown RBP18.35■□□□□ 0.53
CLN3-230ENST00000568076 COL28A1Q2UY09 1125 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 EEF1A1P5Q5VTE0 462 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 OR5M10Q6IEU7 315 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 LCN10Q6JVE6 187 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 WDR5BQ86VZ2 330 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 C19orf18Q8NEA5 215 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 HSD17B8Q92506 261 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 RGP1Q92546 391 aaPredicted RBP18.35■□□□□ 0.53
CLN3-230ENST00000568076 PIGKQ92643 395 aa18.35■□□□□ 0.53
CLN3-230ENST00000568076 NPAS1Q99742 590 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms