RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZSCAN4Q8NAM6 433 aaPredicted RBP8.41□□□□□ -1.06
VPS39-205ENST00000562258 FNDC9Q8TBE3 224 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 ENKURQ8TC29 256 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CA5BP1Q8WTZ4 195 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 SPTSSAQ969W0 71 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 MESP1Q9BRJ9 268 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 MND1Q9BWT6 205 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 UBQLN3Q9H347 655 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 SLC22A11Q9NSA0 550 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 CRNNQ9UBG3 495 aaPredicted RBP8.41□□□□□ -1.06
VPS39-205ENST00000562258 BAIAP2Q9UQB8 552 aa8.41□□□□□ -1.06
VPS39-205ENST00000562258 TMEM269A0A1B0GVZ9 245 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 ZNF593O00488 134 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 SYT7O43581 403 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 LRP3O75074 770 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 ARL6IP5O75915 188 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 RLN1P04808 185 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 TMEM225BP0DP42 221 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 C21orf33P30042 268 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 CD97P48960 835 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 EMP3P54852 163 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 IL10RAQ13651 578 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 TAB1Q15750 504 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 ZNF322Q6U7Q0 402 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 GOLM1Q8NBJ4 401 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 AP3S1Q92572 193 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 DHRS1Q96LJ7 313 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 KCTD7Q96MP8 289 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 ALG12Q9BV10 488 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 NGBQ9NPG2 151 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 SIRT3Q9NTG7 399 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 CD300AQ9UGN4 299 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 ZNF223Q9UK11 482 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 DHDHQ9UQ10 334 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 SPEF1Q9Y4P9 236 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 PCDHGB2Q9Y5G2 931 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 HTR3EA5X5Y0 456 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 A6NIN4 97 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 CDX4O14627 284 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 WISP3O95389 354 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 C8BP07358 591 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 POU4F3Q15319 338 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 CD226Q15762 336 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 DMRTC1Q5HYR2 192 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 ATAD3CQ5T2N8 411 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 C1QL3Q5VWW1 255 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 LACC1Q8IV20 430 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 VRK1Q99986 396 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 HCAR1Q9BXC0 346 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 HES7Q9BYE0 225 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 EMC7Q9NPA0 242 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 OBP2BQ9NPH6 170 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 ING4Q9UNL4 249 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 COA3Q9Y2R0 106 aaPredicted RBP8.4□□□□□ -1.06
VPS39-205ENST00000562258 PRUNE2Q8WUY3 3088 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 DOCK4Q8N1I0 1966 aa8.4□□□□□ -1.06
VPS39-205ENST00000562258 DVL2O14641 736 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 CSRP1P21291 193 aaKnown RBP8.4□□□□□ -1.07
VPS39-205ENST00000562258 DAPP51397 102 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 HSF1Q00613 529 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 CFHR1Q03591 330 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 FCRLAQ7L513 359 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 RNF113BQ8IZP6 322 aaKnown RBP8.4□□□□□ -1.07
VPS39-205ENST00000562258 UBASH3BQ8TF42 649 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 SPSB2Q99619 263 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 TMEM138Q9NPI0 162 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 ABCD2Q9UBJ2 740 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 KLK13Q9UKR3 277 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 SNRNP200O75643 2136 aaKnown RBP8.4□□□□□ -1.07
VPS39-205ENST00000562258 LOC100509620A0A075B734 347 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 OR2M5A3KFT3 312 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 SOCS6O14544 535 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 AGFG2O95081 481 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 QDPRP09417 244 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 CASP3P42574 277 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 UCNP55089 124 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 TPTEP56180 551 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 FOXK2Q01167 660 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 MPEG1Q2M385 716 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 FAM57BQ71RH2 274 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 TIPARPQ7Z3E1 657 aaKnown RBP8.4□□□□□ -1.07
VPS39-205ENST00000562258 C9orf40Q8IXQ3 194 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 POGLUT1Q8NBL1 392 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 PIGCQ92535 297 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 KTI12Q96EK9 354 aaPredicted RBP8.4□□□□□ -1.07
VPS39-205ENST00000562258 ALG8Q9BVK2 526 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 ELOVL3Q9HB03 270 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 BCL2L10Q9HD36 194 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 ACER3Q9NUN7 267 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 DAPK2Q9UIK4 370 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 KLHL21Q9UJP4 597 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 CCL27Q9Y4X3 112 aa8.4□□□□□ -1.07
VPS39-205ENST00000562258 PLXNA4Q9HCM2 1894 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 PRAMEF27A3QJZ7 478 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CENPBD1B2RD01 187 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 ZNF879B4DU55 563 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 CLUP10909 449 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 NPR2P20594 1047 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 DIO1P49895 249 aa8.39□□□□□ -1.07
VPS39-205ENST00000562258 DSCR4P56555 118 aaPredicted RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms