RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MARS2Q96GW9 593 aaKnown RBP12.2□□□□□ -0.46
CLK3-206ENST00000562078 TEX101Q9BY14 249 aa12.2□□□□□ -0.46
CLK3-206ENST00000562078 ZNF230Q9UIE0 474 aaPredicted RBP12.2□□□□□ -0.46
CLK3-206ENST00000562078 C9orf170A2RU37 121 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ZNF705EA8MWA4 302 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 CTDSPLO15194 276 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 RPN2P04844 631 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 AKR1C3P42330 323 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 HTR5AP47898 357 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 IL10RAQ13651 578 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 NCMAPQ5T1S8 102 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ZNF776Q68DI1 518 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 OR52W1Q6IF63 320 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 REEP3Q6NUK4 255 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 FAM129CQ86XR2 697 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 C17orf47Q8NEP4 570 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ABHD4Q8TB40 342 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 LGALS14Q8TCE9 139 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 C16orf78Q8WTQ4 265 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 SMAP2Q8WU79 429 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 CXorf40BQ96DE9 158 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 BBS4Q96RK4 519 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 CLCC1Q96S66 551 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 TIMP4Q99727 224 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 VRK1Q99986 396 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 EDEM2Q9BV94 578 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 A4GNTQ9UNA3 340 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 A0A0C4DFX4 3053 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 FANCMQ8IYD8 2048 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 NAP1L6A6NFF2 107 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 RFPL4AA6NLU0 287 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 RFPL4AL1F8VTS6 287 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 M0R3H8 397 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 PPIHO43447 177 aaKnown RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 ITGA10O75578 1167 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 KLHL18O94889 574 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 NDUFB6O95139 128 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 NTN1O95631 604 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 IGHV2-5P01817 119 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ATP1B1P05026 303 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 HOXC4P09017 264 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 FURINP09958 794 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 COX5BP10606 129 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ERGP11308 486 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ZNF14P17017 642 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 TNFAIP8L2Q6P589 184 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 UNQ6494/PRO21346Q6UXR6 183 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 MMP21Q8N119 569 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 DEFB123Q8N688 67 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ZNF614Q8N883 585 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 ZNF383Q8NA42 475 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 OR5W2Q8NH69 310 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 UBE2E3Q969T4 207 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 HIST1H2BAQ96A08 127 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 PPCDCQ96CD2 204 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 SSX3Q99909 188 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 BHLHE41Q9C0J9 482 aaPredicted RBP12.19□□□□□ -0.46
CLK3-206ENST00000562078 MYNNQ9NPC7 610 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 TMEM138Q9NPI0 162 aa12.19□□□□□ -0.46
CLK3-206ENST00000562078 LOC390937A0A1W2PQ73 354 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 KANTRA0A1W2PQU2 76 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 ZC3H12DA2A288 527 aaKnown RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 OR14I1A6ND48 311 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 CXorf65A6NEN9 183 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 STMND1H3BQB6 276 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SOCS6O14544 535 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SLC34A2O95436 690 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SLC2A10O95528 541 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 RLN1P04808 185 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SAGP10523 405 aaPredicted RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 AGAP20933 346 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SDHAP31040 664 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 ACVR1BP36896 505 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 RAB2AP61019 212 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 AADACL4Q5VUY2 407 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 RPTNQ6XPR3 784 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 HMGN2P46Q86SG4 172 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 LRRTM1Q86UE6 522 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 OR14C36Q8NHC7 312 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 ZNF671Q8TAW3 534 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SLC38A5Q8WUX1 472 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SLAMF9Q96A28 289 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 GUCD1Q96NT3 240 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 CNTNAP3BQ96NU0 1288 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 GABRG3Q99928 467 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 MENTQ9BUN1 341 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 ALG8Q9BVK2 526 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 TMPRSS5Q9H3S3 457 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 ACKR4Q9NPB9 350 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PHPT1Q9NRX4 125 aaPredicted RBP12.18□□□□□ -0.46
CLK3-206ENST00000562078 MAN2C1Q9NTJ4 1040 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 PPP1R14DQ9NXH3 145 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 IL20RAQ9UHF4 553 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 KCNK6Q9Y257 313 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 TRIOO75962 3097 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 FEZF1A0PJY2 475 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 FAM183AA6NL82 134 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 SYT5O00445 386 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 IL3P08700 152 aa12.18□□□□□ -0.46
CLK3-206ENST00000562078 EPXP11678 715 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms