RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 LEUTXA8MZ59 168 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ZNF814B7Z6K7 855 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 INMT-MINDY4F8WBC2 141 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 G3V3Q6 166 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ZNF593O00488 134 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 KPNA3O00505 521 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 BHLHE40O14503 412 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 SOCS6O14544 535 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CDC42EP2O14613 210 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 SLC9A3R1O14745 358 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 CASKO14936 926 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CTDSPLO15194 276 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CCL16O15467 120 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ZNF749O43361 778 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 EMC8O43402 210 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 LANCL1O43813 399 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 PIP5K1CO60331 668 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 FMO6PO60774 539 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 PRAF2O60831 178 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 POP7O75817 140 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 FGF18O76093 207 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 UBL3O95164 117 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 AGR2O95994 175 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 PAHP00439 452 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 RAF1P04049 648 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 HMGN1P05114 100 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 HMGN2P05204 90 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 TPOP07202 933 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ACAA1P09110 424 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 UCHL1P09936 223 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 SULT1A3P0DMM9 295 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 SULT1A4P0DMN0 295 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 SAGP10523 405 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 ALPPL2P10696 532 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ANXA3P12429 323 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 GJA1P17302 382 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ELK1P19419 428 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CSNK2A2P19784 350 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 CELP19835 753 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 C5AR1P21730 350 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 TBXA2RP21731 343 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 HIST1H1TP22492 207 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 F8A1P23610 371 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ATP5A1P25705 553 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 STOMP27105 288 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 PEBP1P30086 187 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 AHRP35869 848 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 NNMTP40261 264 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 MNDAP41218 407 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 GPR1P46091 355 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 GPR4P46093 362 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 OR3A3P47888 321 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 COMPP49747 757 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 RAB28P51157 221 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 MMP15P51511 669 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CLCNKAP51800 687 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 NCBP2P52298 156 aaKnown RBP eCLIP2.24□□□□□ -2.05
SPG11-223ENST00000560858 PRMT2P55345 433 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CCL23P55773 120 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CAV3P56539 151 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CTBP2P56545 445 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 RGS8P57771 180 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 DSCR9P59020 149 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 TAS2R41P59536 307 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 EEF1A1P68104 462 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 CDK3Q00526 305 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 HSF2Q03933 536 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 RGS1Q08116 209 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 BAMBIQ13145 260 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 NOGQ13253 232 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 TSTA3Q13630 321 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 IL18Q14116 193 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 GALEQ14376 348 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 GGTLC2Q14390 218 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 LASP1Q14847 261 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 FCN2Q15485 313 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 TEAD2Q15562 447 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 MLF2Q15773 248 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 COL28A1Q2UY09 1125 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 HNRNPA1L2Q32P51 320 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 POM121L1PQ3SYA9 428 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ESCO2Q56NI9 601 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 TCEAL5Q5H9L2 206 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ZNF311Q5JNZ3 666 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 CLLU1Q5K131 121 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ELFN2Q5R3F8 820 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 C9orf64Q5T6V5 341 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 PIP5KL1Q5T9C9 394 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 FHL5Q5TD97 284 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 FAM46CQ5VWP2 391 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 OLFML2AQ68BL7 652 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 DMKNQ6E0U4 476 aaPredicted RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 OR4C11Q6IEV9 310 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 TYW3Q6IPR3 259 aaKnown RBP2.24□□□□□ -2.05
SPG11-223ENST00000560858 PYHIN1Q6K0P9 492 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 MFSD12Q6NUT3 480 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 RPL13AP3Q6NVV1 102 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 ANKRD54Q6NXT1 300 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 SLC30A6Q6NXT4 461 aa2.24□□□□□ -2.05
SPG11-223ENST00000560858 FAM180BQ6P0A1 224 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms