RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 C1QTNF9BB2RNN3 333 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 KLF7O75840 302 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 ALPLP05186 524 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 RFPL3SP0C7P2 107 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 C1QTNF9P0C862 333 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 HIST1H1CP16403 213 aaKnown RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 IL11P20809 199 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PSMA1P25786 263 aaKnown RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 HTR2AP28223 471 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 DIO1P49895 249 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 FUT5Q11128 374 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 LCN1P1Q5VSP4 162 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 BORAQ6PGQ7 559 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 C17orf82Q86X59 251 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 SPACA3Q8IXA5 215 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 IZUMO1Q8IYV9 350 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 CHST4Q8NCG5 386 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 ABHD3Q8WU67 409 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 CCDC120Q96HB5 630 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 CRELD1Q96HD1 420 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 UBL7Q96S82 380 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 FAM173AQ9BQD7 235 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 DDA1Q9BW61 102 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 RACGAP1Q9H0H5 632 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 CCNB1IP1Q9NPC3 277 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 GPR27Q9NS67 375 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 COA3Q9Y2R0 106 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 HRH3Q9Y5N1 445 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 MYO15AQ9UKN7 3530 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 hCG_1807616A0A1W2PRN6 198 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF670-ZNF695F2Z2N8 137 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 SYT5O00445 386 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 CDC42EP2O14613 210 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 AIREO43918 545 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PRKYO43930 277 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 LRP3O75074 770 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 ATE1O95260 518 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 NADKO95544 446 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 IL2RAP01589 272 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 TDGF1P13385 188 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 B4GALT1P15291 398 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PTPN6P29350 595 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 POU3F4P49335 361 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 IDH3GP51553 393 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 GBX2P52951 348 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 MVDP53602 400 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PRPS1P60891 318 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 TSPAN31Q12999 210 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 EIF2B1Q14232 305 aaKnown RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 TSC22D1Q15714 1073 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 LRRN1Q6UXK5 716 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 SLC16A14Q7RTX9 510 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 FJX1Q86VR8 437 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 CALHM3Q86XJ0 350 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 KLHL36Q8N4N3 616 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF611Q8N823 705 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 EXD3Q8N9H8 876 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PLPP7Q8NBV4 271 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 OR5J2Q8NH18 312 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 C9orf43Q8TAL5 461 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 TAAR8Q969N4 342 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PGAM5Q96HS1 289 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 TXNDC15Q96J42 360 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 FRMD6Q96NE9 622 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 NKX3-1Q99801 234 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-209ENST00000560637 SARGQ9BW04 601 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 CRLF2Q9HC73 371 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 BCL2L10Q9HD36 194 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 DLL3Q9NYJ7 618 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 COMMD3Q9UBI1 195 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 ZNF229Q9UJW7 825 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 A4GNTQ9UNA3 340 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 RNF6Q9Y252 685 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PCDHGB5Q9Y5G0 923 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 PRR14LQ5THK1 2151 aa4.93□□□□□ -1.62
VPS13C-209ENST00000560637 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 TCRBV5S2A0A599 114 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 DPPA5A6NC42 116 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 ALG1L2C9J202 215 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 H3BSA7 217 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 SLC1A7O00341 560 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 MAGEB3O15480 346 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 EIF4E2O60573 245 aaKnown RBP4.92□□□□□ -1.62
VPS13C-209ENST00000560637 IGHG1P01857 330 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 THBS1P07996 1170 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 TBXA2RP21731 343 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 MYL9P24844 172 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 PTGS2P35354 604 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 MAP3K8P41279 467 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 SLC15A1P46059 708 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 RPL5P46777 297 aaKnown RBP4.92□□□□□ -1.62
VPS13C-209ENST00000560637 TXNL4AP83876 142 aaKnown RBP4.92□□□□□ -1.62
VPS13C-209ENST00000560637 FGFBP1Q14512 234 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 EIF2S3LQ2VIR3 472 aaKnown RBP4.92□□□□□ -1.62
VPS13C-209ENST00000560637 KLHL22Q53GT1 634 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 H1FNTQ75WM6 255 aaPredicted RBP4.92□□□□□ -1.62
VPS13C-209ENST00000560637 FGD2Q7Z6J4 655 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 GLB1L2Q8IW92 636 aa4.92□□□□□ -1.62
VPS13C-209ENST00000560637 ACBD7Q8N6N7 88 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms