RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KISS1RQ969F8 398 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-228ENST00000557302 PIP5K1AQ99755 562 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 ACTR6Q9GZN1 396 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 SLCO5A1Q9H2Y9 848 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 C20orf141Q9NUB4 165 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 UPB1Q9UBR1 384 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 RCE1Q9Y256 329 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 NOX1Q9Y5S8 564 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 FREM1Q5H8C1 2179 aa12.01□□□□□ -0.49
SHMT2-228ENST00000557302 A0A1W2PRQ8 180 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 OR6C65A6NJZ3 312 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 CASKO14936 926 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 TRAF3IP2O43734 574 aaPredicted RBP12□□□□□ -0.49
SHMT2-228ENST00000557302 PIP5K1CO60331 668 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 DNAJC8O75937 253 aaPredicted RBP12□□□□□ -0.49
SHMT2-228ENST00000557302 DIRAS1O95057 198 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 ASAH2BP0C7U1 165 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 ADORA3P0DMS8 318 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 IFI30P13284 250 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 FUT1P19526 365 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 COX5AP20674 150 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 SELENOPP49908 381 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 POU3F1Q03052 451 aaPredicted RBP12□□□□□ -0.49
SHMT2-228ENST00000557302 DGCR6Q14129 220 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 FGD3Q5JSP0 725 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 TSPO2Q5TGU0 170 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 NIPAL3Q6P499 406 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 ZNF730Q6ZMV8 503 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 RRM2BQ7LG56 351 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 BHLHA15Q7RTS1 189 aaPredicted RBP12□□□□□ -0.49
SHMT2-228ENST00000557302 PXKQ7Z7A4 578 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 NRMQ8IXM6 262 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 RNF113BQ8IZP6 322 aaKnown RBP12□□□□□ -0.49
SHMT2-228ENST00000557302 LRRC17Q8N6Y2 441 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 POMGNT2Q8NAT1 580 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 POP5Q969H6 163 aaKnown RBP12□□□□□ -0.49
SHMT2-228ENST00000557302 BPIFA2Q96DR5 249 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 LRGUKQ96M69 825 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 WFIKKN1Q96NZ8 548 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 SEPHS2Q99611 448 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 TRIM15Q9C019 465 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 OR10A4Q9H209 315 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 IL1RAPQ9NPH3 570 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 SLC7A10Q9NS82 523 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 ASB6Q9NWX5 421 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 ZNF226Q9NYT6 803 aa12□□□□□ -0.49
SHMT2-228ENST00000557302 A0A087WUU8 490 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 TCRBV5S2A0A599 114 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 A6NNC1 897 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 C11orf98E9PRG8 122 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 RNF13O43567 381 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 SERPINI2O75830 405 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 LYZL6O75951 148 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 KRT33AO76009 404 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 HLA-DOBP13765 273 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 IGHV1-2P23083 117 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 DNAJA1P31689 397 aaKnown RBP11.99□□□□□ -0.49
SHMT2-228ENST00000557302 SMIM11AP58511 58 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 LSM11P83369 360 aaKnown RBP eCLIP11.99□□□□□ -0.49
SHMT2-228ENST00000557302 ZP4Q12836 540 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 FAPQ12884 760 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 TRAP1Q12931 704 aaKnown RBP11.99□□□□□ -0.49
SHMT2-228ENST00000557302 DAZAP2Q15038 168 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-228ENST00000557302 TSC22D1Q15714 1073 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 IQCCQ4KMZ1 466 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 PGM2L1Q6PCE3 622 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 MBOAT2Q6ZWT7 520 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 ZDHHC21Q8IVQ6 265 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 ANKK1Q8NFD2 765 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 SLC7A13Q8TCU3 470 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 LIPHQ8WWY8 451 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 S100PBPQ96BU1 408 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 ZC3HAV1LQ96H79 300 aaKnown RBP11.99□□□□□ -0.49
SHMT2-228ENST00000557302 ZNF347Q96SE7 839 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 USB1Q9BQ65 265 aaKnown RBP11.99□□□□□ -0.49
SHMT2-228ENST00000557302 MCCC2Q9HCC0 563 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 TAS2R16Q9NYV7 291 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 MYO9AB2RTY4 2548 aa11.99□□□□□ -0.49
SHMT2-228ENST00000557302 CIB4A0PJX0 185 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 ZNF587BE7ETH6 402 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 BLOC1S5-TXNDC5H3BN57 136 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 ACOT8O14734 319 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 GSC2O15499 205 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 SLC43A1O75387 559 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 ZNF432O94892 652 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 GOSR1O95249 250 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 SAGP10523 405 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-228ENST00000557302 SPIBQ01892 262 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 PRKCDQ05655 676 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 CHRNB3Q05901 458 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 FAM98BQ52LJ0 330 aaKnown RBP11.98□□□□□ -0.49
SHMT2-228ENST00000557302 PODNL1Q6PEZ8 512 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 TBPL2Q6SJ96 375 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 PIWIL3Q7Z3Z3 882 aaKnown RBP11.98□□□□□ -0.49
SHMT2-228ENST00000557302 ABHD12BQ7Z5M8 362 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-228ENST00000557302 TMEM200AQ86VY9 491 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 CDK20Q8IZL9 346 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 ZNF433Q8N7K0 673 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-228ENST00000557302 OR52J3Q8NH60 311 aa11.98□□□□□ -0.49
SHMT2-228ENST00000557302 DHRS1Q96LJ7 313 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms