RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PVR	P15151	417 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CXCL3	P19876	107 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	SERPINA2	P20848	420 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MAOB	P27338	520 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ETV6	P41212	452 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB28	P51157	221 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TAS2R20	P59543	309 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ARF3	P61204	181 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ARF1	P84077	181 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CBFB	Q13951	182 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR18	Q14330	331 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	IHH	Q14623	411 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	HLX	Q14774	488 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	SMAD2	Q15796	467 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CST6	Q15828	149 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	STEAP1B	Q6NZ63	245 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GLDN	Q6ZMI3	551 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ADGRF3	Q8IZF5	1079 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR5M1	Q8NGP8	315 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR14K1	Q8NGZ2	314 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	FBLIM1	Q8WUP2	373 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	FAM71F1	Q96KD3	344 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TEAD3	Q99594	435 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PELO	Q9BRX2	385 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC46A2	Q9BY10	475 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MTIF3	Q9H2K0	278 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CGGBP1	Q9UFW8	167 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	SMCHD1	A6NHR9	2005 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005		A0A087WUU8	490 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	P2RY10	O00398	339 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMPRSS11D	O60235	418 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	NME2P1	O60361	137 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPANK1	O95872	356 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TGM6	O95932	706 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OPN1LW	P04000	364 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GNB3	P16520	340 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	HTR2C	P28335	458 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MMP15	P51511	669 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	SNRPN	P63162	240 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PMPCA	Q10713	525 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR7A5	Q15622	319 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GLYR1	Q49A26	553 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	EIF5AL1	Q6IS14	154 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF620	Q6ZNG0	422 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005		Q6ZTK2	550 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	COX15	Q7KZN9	410 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLRN3	Q8NCR9	226 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	DDIT4L	Q96D03	193 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PGAM5	Q96HS1	289 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLCC1	Q96S66	551 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ALG12	Q9BV10	488 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	C1QTNF6	Q9BXI9	259 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ISYNA1	Q9NPH2	558 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRSS16	Q9NQE7	514 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	DKKL1	Q9UK85	242 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ETV7	Q9Y603	341 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRBV5-4	A0A0C4DH59	114 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005		A0A1B0GUH1	482 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	GAPDHS	O14556	408 aa	Predicted RBP	4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	MPIG6B	O95866	241 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	HBQ1	P09105	142 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	GAA	P10253	952 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	FBL	P22087	321 aa	Known RBP	4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	P2RY2	P41231	377 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	EPHA4	P54764	986 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	C19orf57	Q0VDD7	668 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLA2G7	Q13093	441 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005		Q499Y3	187 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	ALKBH2	Q6NS38	261 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	BEND4	Q6ZU67	534 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	NAA40	Q86UY6	237 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR1J2	Q8NGS2	313 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	ST7L	Q8TDW4	575 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	SSX3	Q99909	188 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	NUDT22	Q9BRQ3	303 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC6A17	Q9H1V8	727 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	METTL7A	Q9H8H3	244 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	VSX1	Q9NZR4	365 aa	Predicted RBP	4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	CCL27	Q9Y4X3	112 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	NYNRIN	Q9P2P1	1898 aa	Known RBP	4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005		A0A087WV62	115 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	CDC14C	A4D256	554 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	LRIT2	A6NDA9	550 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	GABARAP	H6UMI1	98 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	PYCARD-AS1	I3L0S3	204 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	FFAR1	O14842	300 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	T	O15178	435 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	SUSD5	O60279	629 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLEC3A	O75596	197 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	KAT7	O95251	611 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	AHSA1	O95433	338 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	AK1	P00568	194 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR2T7	P0C7T2	308 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF44	P15621	663 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	CSRP3	P50461	194 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	PPT1	P50897	306 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	RSU1	Q15404	277 aa		4.59	□□□□□ -1.67
SYNE2-223	ENST00000557005	SSX2	Q16385	188 aa		4.59	□□□□□ -1.67

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