RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 C10orf67Q8IYJ2 551 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 LRRC34Q8IZ02 419 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ZCCHC7Q8N3Z6 543 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 BBS1Q8NFJ9 593 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 OR8K1Q8NGG5 319 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 OR13C5Q8NGS8 318 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TEX47Q8TBZ9 253 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 PAQR8Q8TEZ7 354 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 PDCD6IPQ8WUM4 868 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 HEXDCQ8WVB3 486 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 DNAJA4Q8WW22 397 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 DYDC1Q8WWB3 177 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 SLC13A3Q8WWT9 602 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 OTUB2Q96DC9 234 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TPD52L3Q96J77 140 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 PARD6BQ9BYG5 372 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TMEM245Q9H330 911 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 EXO5Q9H790 373 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 LZTFL1Q9NQ48 299 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CISHQ9NSE2 258 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 DDX28Q9NUL7 540 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 SENP1Q9P0U3 644 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 STX18Q9P2W9 335 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 DEC1Q9P2X7 70 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 Q9UF83 564 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CYTH4Q9UIA0 394 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 NOCTQ9UK39 431 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TMCO1Q9UM00 188 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 FBXO7Q9Y3I1 522 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 NEUROG3Q9Y4Z2 214 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 BZW2Q9Y6E2 419 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CLCA3PQ9Y6N3 262 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF106Q9H2Y7 1883 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 SPTBP11277 2137 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 SEC16AO15027 2179 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 VPS13CQ709C8 3753 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CSMD2Q7Z408 3487 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ZFHX3Q15911 3703 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 SNRNP200O75643 2136 aaKnown RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 SERTM2A0A1B0GWG4 89 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 MACROD2A1Z1Q3 448 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 A4D1N5 150 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 FAM47DPA6NHR8 397 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ZSCAN5BA6NJL1 495 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 TMEM210A6NLX4 147 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CRCPO75575 148 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 RHBDL1O75783 438 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 IFNA14P01570 189 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PRB2P02812 416 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ALPPP05187 535 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 KRT8P05787 483 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 IGHV4-34P06331 123 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ALPPL2P10696 532 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PSMB4P28070 264 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ATP5C1P36542 298 aaKnown RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 MDH1P40925 334 aaKnown RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PPP1R2P41236 205 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 RGRP47804 291 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PITPNBP48739 271 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 NUMBP49757 651 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 METAP1P53582 386 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 YWHAGP61981 247 aaKnown RBP eCLIP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CRMP1Q14194 572 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 MEP1BQ16820 701 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 NKAIN1Q4KMZ8 207 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ETFRF1Q6IPR1 90 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF770Q6IQ21 691 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PPP1R2P3Q6NXS1 205 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PMF1Q6P1K2 205 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 LINC00696Q6ZRV3 163 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CCDC121Q6ZUS5 278 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 OTOAQ7RTW8 1153 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ANKFN1Q8N957 763 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ASZ1Q8WWH4 475 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PRCCQ92733 491 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 SLC35C1Q96A29 364 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 BPIFA2Q96DR5 249 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 MCCC1Q96RQ3 725 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CYTH2Q99418 400 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 KCNS3Q9BQ31 491 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CCM2Q9BSQ5 444 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 GPR174Q9BXC1 333 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 GPR61Q9BZJ8 451 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ULBP1Q9BZM6 244 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 DRC3Q9H069 523 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 FBXO44Q9H4M3 255 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ASB8Q9H765 288 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 LRRC40Q9H9A6 602 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CYP3A43Q9HB55 503 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ACP6Q9NPH0 428 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 PFDN4Q9NQP4 134 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ZNF275Q9NSD4 429 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ADAM22Q9P0K1 906 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 ATP6V1HQ9UI12 483 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 STOML2Q9UJZ1 356 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 RPH3AQ9Y2J0 694 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 MRPS2Q9Y399 296 aaKnown RBP3.52□□□□□ -1.85
PRPF39-209ENST00000556353 SPACA6W5XKT8 324 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 CNTRLQ7Z7A1 2325 aa3.52□□□□□ -1.85
PRPF39-209ENST00000556353 MED13Q9UHV7 2174 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms