RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZNF583Q96ND8 569 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 BDH2Q9BUT1 245 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 TRAF4Q9BUZ4 470 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 CISD1Q9NZ45 108 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 CRNNQ9UBG3 495 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 SEC14L4Q9UDX3 406 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 BAG5Q9UL15 447 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 LAMP3Q9UQV4 416 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 NSD1Q96L73 2696 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 FAM220BPB1ANY3 271 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 MS4A18H0YCH9 400 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 SLC43A1O75387 559 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 KRT33AO76009 404 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 IFNA14P01570 189 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 INHBBP09529 407 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF83P51522 516 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 CLDN17P56750 224 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 C1DQ13901 141 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 MS4A18Q3C1V0 323 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 TBRG1Q3YBR2 411 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF544Q6NX49 715 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 ANKRD16Q6P6B7 361 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 LINGO2Q7L985 606 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 PXKQ7Z7A4 578 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 PIK3C3Q8NEB9 887 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 OR4D11Q8NGI4 311 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 RP9Q8TA86 221 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 SLC26A7Q8TE54 656 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 GTPBP3Q969Y2 492 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 ALKBH3Q96Q83 286 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 OR2M2Q96R28 347 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 DHRS9Q9BPW9 319 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 ASPNQ9BXN1 380 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 NOX1Q9Y5S8 564 aa14.04□□□□□ -0.16
CCDC88C-209ENST00000554872 USF3Q68DE3 2245 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 CCDC22O60826 627 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 UPK3AO75631 287 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 CD8AP01732 235 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 THY1P04216 161 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 ATP5J2P56134 94 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 PUDPQ08623 228 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 AGAP6Q5VW22 663 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 WDR88Q6ZMY6 472 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF627Q7L945 461 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 UEVLDQ8IX04 471 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 CCDC36Q8IYA8 594 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 KDM8Q8N371 416 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 PROX1Q92786 737 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 BCL2L2Q92843 193 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 TRMT61AQ96FX7 289 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 Q96MF0 132 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 MOGAT1Q96PD6 335 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 NELFAQ9H3P2 528 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 FKRPQ9H9S5 495 aa14.03□□□□□ -0.16
CCDC88C-209ENST00000554872 E7EQL1 145 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 M0R1B8 84 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 PLPP3O14495 311 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 HPRP00739 348 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 IGLV1-44P01699 117 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 THRBP10828 461 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 NQO1P15559 274 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 RBM34P42696 430 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 ROR2Q01974 943 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 ZP4Q12836 540 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 ZNF74Q16587 644 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 HIKESHIQ53FT3 197 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 C9orf135Q5VTT2 229 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 C11orf71Q6IPW1 123 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 HMBOX1Q6NT76 420 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 SLC22A25Q6T423 547 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 TSPYL5Q86VY4 417 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 RBM45Q8IUH3 476 aaKnown RBP14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 DEPDC4Q8N2C3 294 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 GPR137CQ8N3F9 429 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 OR5J2Q8NH18 312 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 KATNB1Q9BVA0 655 aa14.02□□□□□ -0.17
CCDC88C-209ENST00000554872 ZANQ9Y493 2812 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 LOC100653049A0A140TA62 436 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 A0A1W2PR80 420 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 CPSF4LA6NMK7 179 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 KRT34O76011 436 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 OR5F1O95221 314 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 IGKV3-15P01624 115 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 TTKP33981 857 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 LGALS3BPQ08380 585 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 SPOCK1Q08629 439 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 PMS2P3Q13401 168 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 KRTAP21-3Q3LHN1 58 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 C8orf82Q6P1X6 216 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 TTC33Q6PID6 262 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 HACD2Q6Y1H2 254 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 B3GLCTQ6Y288 498 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 DNM1P46Q6ZS02 220 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 CARM1Q86X55 608 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 C20orf196Q8IYI0 205 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 PIAS4Q8N2W9 510 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 OR2T12Q8NG77 320 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 VANGL1Q8TAA9 524 aaPredicted RBP14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 RNF217Q8TC41 542 aa14.01□□□□□ -0.17
CCDC88C-209ENST00000554872 PRSS27Q9BQR3 290 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 262 ms