RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 LIPHQ8WWY8 451 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ZC3HAV1LQ96H79 300 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 SLC7A10Q9NS82 523 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 CD300AQ9UGN4 299 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 EGFL7Q9UHF1 273 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 A4GNTQ9UNA3 340 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 ENPP4Q9Y6X5 453 aa12.68□□□□□ -0.38
CCDC88C-207ENST00000554051 NAV2Q8IVL1 2488 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 ABCA12Q86UK0 2595 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 NPIPB13A6NJU9 1138 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 NPIPB4C9JG80 1138 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 PLPP3O14495 311 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 OR7A10O76100 309 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 CH25HO95992 272 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 IGHV3-9P01782 118 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 ITGA5P08648 1049 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 ASAH2BP0C7U1 165 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 ADORA3P0DMS8 318 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 NR2C1P13056 603 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 NCK1P16333 377 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 HOXB6P17509 224 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 RHCEP18577 417 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 SMIM11AP58511 58 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 TAF11Q15544 211 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 TAB1Q15750 504 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 TSPO2Q5TGU0 170 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 HMBOX1Q6NT76 420 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 KLHL17Q6TDP4 642 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 C20orf204Q6ZNR8 217 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 TSPYL5Q86VY4 417 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 CDK20Q8IZL9 346 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 GPR137CQ8N3F9 429 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 RBM15BQ8NDT2 890 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 TMEM255BQ8WV15 326 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 ACOT11Q8WXI4 607 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 PIK3IP1Q96FE7 263 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 LRR1Q96L50 414 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 GMPR2Q9P2T1 348 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 TMEM5Q9Y2B1 443 aa12.67□□□□□ -0.38
CCDC88C-207ENST00000554051 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 A0A1W2PRQ8 180 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 ZNF726A6NNF4 738 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 CENPBD1B2RD01 187 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 RPL36A-HNRNPH2H7BZ11 118 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 TMCC2O75069 709 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 ZNF432O94892 652 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 WNT11O96014 354 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 RAF1P04049 648 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 THBDP07204 575 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 HOXB1P14653 301 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 TCN1P20061 433 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 AHCYP23526 432 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 EDNRAP25101 427 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 SLC9A3P48764 834 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 SELENOPP49908 381 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 DAP3P51398 398 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 UGT2B15P54855 530 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 DGCR6Q14129 220 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 DNAL1Q4LDG9 190 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 ANKRD34AQ69YU3 496 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 TMEM123Q8N131 208 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 RNF148Q8N7C7 305 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 RADILQ96JH8 1075 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 MUS81Q96NY9 551 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 ALKBH3Q96Q83 286 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 OR2M2Q96R28 347 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 TRIM15Q9C019 465 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 MEPEQ9NQ76 525 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 ACTR3BQ9P1U1 418 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 SEC14L4Q9UDX3 406 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 CENPEQ02224 2701 aa12.66□□□□□ -0.38
CCDC88C-207ENST00000554051 A0A1W2PRG6 482 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 MS4A18H0YCH9 400 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 RNF13O43567 381 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 H1F0P07305 194 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 CD3EP07766 207 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 PTNP21246 168 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 CBLP22681 906 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 DNASE1P24855 282 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 NTF4P34130 210 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 KRTAP10-9P60411 292 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 LTBQ06643 244 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 GABRA6Q16445 453 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 MS4A18Q3C1V0 323 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 FAM205BPQ63HN1 556 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 TMEM108Q6UXF1 575 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 ZNF730Q6ZMV8 503 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 RRM2BQ7LG56 351 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 SLC46A3Q7Z3Q1 461 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 NKAIN4Q8IVV8 208 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 CCDC36Q8IYA8 594 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 OR6X1Q8NH79 312 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 PFN4Q8NHR9 129 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 MAGEE2Q8TD90 523 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 BPIFA2Q96DR5 249 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 PYURFQ96I23 114 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 PIP5K1AQ99755 562 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 PLEKHF2Q9H8W4 249 aa12.65□□□□□ -0.38
CCDC88C-207ENST00000554051 ST6GALNAC2Q9UJ37 374 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms