RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 MPTX1A8MV57 137 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 F5H5P2 479 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 F8W036 122 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 RPP14O95059 124 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CXCL10P02778 98 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SPP1P10451 314 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TYRP1P17643 537 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 BMP7P18075 431 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 NFYBP25208 207 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CCR4P51679 360 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TAS2R20P59543 309 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 EEF1A1P68104 462 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 PDGFRLQ15198 375 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OR1Q1Q15612 314 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 NNATQ16517 81 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 HNRNPA1L2Q32P51 320 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 PCGF3Q3KNV8 242 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TRMT12Q53H54 448 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OLFML2AQ68BL7 652 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MFSD12Q6NUT3 480 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM185AQ8NFB2 350 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SETD7Q8WTS6 366 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MS4A6EQ96DS6 147 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SEC22AQ96IW7 307 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CYYR1Q96J86 154 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 Q96M85 177 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TSSK2Q96PF2 358 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 KXD1Q9BQD3 176 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CCDC3Q9BQI4 270 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 PTDSS2Q9BVG9 487 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 FAM117AQ9C073 453 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CTSFQ9UBX1 484 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 KLHDC2Q9Y2U9 406 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SLC22A31A6NKX4 558 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ACTL6AO96019 429 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CD3DP04234 171 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 FBXO45P0C2W1 286 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 H2AFB1P0C5Y9 115 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CBR1P16152 277 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CSNK2A2P19784 350 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 HIST1H1TP22492 207 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 PRKAR1BP31321 381 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 HOXA1P49639 335 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 POLR2GP62487 172 aaKnown RBP eCLIP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 LGALS3BPQ08380 585 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 EIF2B5Q13144 721 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MLF2Q15773 248 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF542PQ5EBM4 170 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 FAM209BQ5JX69 171 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MRPL2Q5T653 305 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 LIN54Q6MZP7 749 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TSSK4Q6SA08 328 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ETV3LQ6ZN32 361 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SLC16A13Q7RTY0 426 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF761Q86XN6 746 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 NAXDQ8IW45 347 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OR52L1Q8NGH7 329 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OR2L2Q8NH16 312 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 HHIPL1Q96JK4 782 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ZC3H10Q96K80 434 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 UQCC2Q9BRT2 126 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 UTP23Q9BRU9 249 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ULBP3Q9BZM4 244 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TLNRD1Q9H1K6 362 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM138Q9NPI0 162 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 RASL12Q9NYN1 266 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 DHCR7Q9UBM7 475 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MLXQ9UH92 298 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 PLCL2Q9UPR0 1127 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SLC35A3Q9Y2D2 325 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TRBV23-1A0A0A0MS06 115 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MEX3AA1L020 520 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CPED1A4D0V7 1026 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 PRAMEF2O60811 474 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 EIF3GO75821 320 aaKnown RBP eCLIP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 KAT7O95251 611 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 GNRH1P01148 92 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MAS1P04201 325 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ACAA1P09110 424 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 AK4P27144 223 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 BDKRB2P30411 391 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 GDI1P31150 447 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 P2RY2P41231 377 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 NPBWR1P48145 328 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 RAB13P51153 203 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 DLX5P56178 289 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 HTRA4P83105 476 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CDK3Q00526 305 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SRSF5Q13243 272 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 NR0B2Q15466 257 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM44Q2T9K0 475 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 JMJD6Q6NYC1 403 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 SLC48A1Q6P1K1 146 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ABHD17CQ6PCB6 329 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 FIGNL1Q6PIW4 674 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM205Q6UW68 189 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ENPP7Q6UWV6 458 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MOB3CQ70IA8 216 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OR2W3Q7Z3T1 314 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms