RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 NDUFB6O95139 128 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 GNRH1P01148 92 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 IL5P05113 134 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SPI1P17947 270 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 IGFALSP35858 605 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 NUP62P37198 522 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 DIO1P49895 249 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 MECP2P51608 486 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 MRPS10P82664 201 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF273Q14593 569 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 KCNAB1Q14722 419 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CST6Q15828 149 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 PRICKLE4Q2TBC4 344 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ALG10BQ5I7T1 473 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM69Q5SWH9 247 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF684Q5T5D7 378 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 LINC01590Q5TEZ4 76 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ARSKQ6UWY0 536 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RTL10Q7L3V2 364 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SLC36A1Q7Z2H8 476 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 MEIOBQ8N635 442 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ESX1Q8N693 406 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF511Q8NB15 262 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 OR6K6Q8NGW6 343 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 C1orf216Q8TAB5 229 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 NT5CQ8TCD5 201 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 STK35Q8TDR2 534 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 LCN9Q8WX39 176 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 PMM1Q92871 262 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 FBXW5Q969U6 566 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TRIM43Q96BQ3 446 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TM4SF19Q96DZ7 209 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 S100A16Q96FQ6 103 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 Q96M85 177 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 HSPA12BQ96MM6 686 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 LRFN5Q96NI6 719 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 NKX3-1Q99801 234 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 UTP23Q9BRU9 249 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 MRI1Q9BV20 369 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RNF208Q9H0X6 261 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SLC6A17Q9H1V8 727 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 KCNK15Q9H427 330 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM27Q9HBJ8 222 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 GPN1Q9HCN4 374 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 PHPT1Q9NRX4 125 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 C14orf105Q9NVL8 296 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 THAP10Q9P2Z0 257 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 OPN4Q9UHM6 478 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 PILRAQ9UKJ1 303 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 MOKQ9UQ07 419 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ENTPD2Q9Y5L3 495 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 V9GY05 133 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 KIAA0100Q14667 2235 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 C2orf16Q68DN1 1984 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TRAV8-7A0A075B6U6 113 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TMEM272A0A1B0GTI8 110 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 KRBOX1C9JBD0 128 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 HRKO00198 91 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CREBL2O60519 120 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 B3GALNT1O75752 331 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TSPAN9O75954 239 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RPP14O95059 124 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CBX7O95931 251 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 IGF2P01344 180 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 IFNA16P05015 189 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RAB40ALP0C0E4 278 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 OR8G3PP0DMU2 310 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 GABRA1P14867 456 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 PVRP15151 417 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CSRP1P21291 193 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CALCRP30988 508 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RPS27P42677 84 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SOX2P48431 317 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 EFNB2P52799 333 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TAS2R20P59543 309 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SEC61A1P61619 476 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RPS15AP62244 130 aaKnown RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ERVK-25P63136 954 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 PSG6Q00889 435 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 GUCA2AQ02747 115 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 IL10RAQ13651 578 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 YOD1Q5VVQ6 348 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 FCRL6Q6DN72 434 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TFAP2EQ6VUC0 442 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 LINC00114Q6XXX2 140 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 STAC2Q6ZMT1 411 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CFAP77Q6ZQR2 320 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 TMUB2Q71RG4 321 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 OVCH2Q7RTZ1 564 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 GLB1L2Q8IW92 636 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CDRT4Q8N9R6 151 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 OR10AC1Q8NH08 325 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 OR1S1Q8NH92 325 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SPPL3Q8TCT6 385 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 ZNF296Q8WUU4 475 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-212ENST00000552491 RAB40AQ8WXH6 277 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 HAVCR1Q96D42 359 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 SERINC2Q96SA4 455 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 NMNAT2Q9BZQ4 307 aa4.95□□□□□ -1.62
LIMA1-212ENST00000552491 CHST6Q9GZX3 395 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms