RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CHRFAM7AQ494W8 412 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 THOC7Q6I9Y2 204 aaKnown RBP14.96□□□□□ -0.01
CUX1-213ENST00000549414 ZNF100Q8IYN0 542 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 OR4M2Q8NGB6 313 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 ORAI1Q96D31 301 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 HYLS1Q96M11 299 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 GPRIN2O60269 458 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 CAPZBP47756 277 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 PCBP4P57723 403 aaKnown RBP14.96□□□□□ -0.01
CUX1-213ENST00000549414 PSPHP78330 225 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 OXA1LQ15070 435 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 TPRA1Q86W33 373 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 HOXB13Q92826 284 aaPredicted RBP14.96□□□□□ -0.01
CUX1-213ENST00000549414 CFHR5Q9BXR6 569 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 OR11A1Q9GZK7 315 aa14.96□□□□□ -0.01
CUX1-213ENST00000549414 SIRT3Q9NTG7 399 aaPredicted RBP14.96□□□□□ -0.01
CUX1-213ENST00000549414 ACOT7O00154 380 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 NRG2O14511 850 aaPredicted RBP14.96□□□□□ -0.02
CUX1-213ENST00000549414 SIGLEC6O43699 453 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 LCATP04180 440 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 LTBQ06643 244 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 FAM189A2Q15884 450 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 NIPAL3Q6P499 406 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 KIRREL2Q6UWL6 708 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 PRSS45Q7RTY3 260 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 RABEPKQ7Z6M1 372 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 BRIX1Q8TDN6 353 aaKnown RBP14.96□□□□□ -0.02
CUX1-213ENST00000549414 SLC25A46Q96AG3 418 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 C8orf44Q96CB5 159 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 ISG20L2Q9H9L3 353 aaKnown RBP14.96□□□□□ -0.02
CUX1-213ENST00000549414 ZNF160Q9HCG1 818 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 CMC2Q9NRP2 79 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 PARPBPQ9NWS1 579 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 MBD2Q9UBB5 411 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 MEMO1Q9Y316 297 aa14.96□□□□□ -0.02
CUX1-213ENST00000549414 BLACEA4D250 179 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 HMX3A6NHT5 357 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 HSPA12AO43301 675 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 CRTAPO75718 401 aaPredicted RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 OR7A10O76100 309 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 NSA2O95478 260 aaKnown RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 EEF1A1P68104 462 aaKnown RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 SMAD4Q13485 552 aaKnown RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 BEST3Q8N1M1 668 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 EMC6Q9BV81 110 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 LRRC61Q9BV99 259 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ZMAT3Q9HA38 289 aaKnown RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 ALG5Q9Y673 324 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 MEGF11A6BM72 1044 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ARPC5O15511 151 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 WDPCPO95876 746 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ZFP36L2P47974 494 aaKnown RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 LSSP48449 732 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ACTBP60709 375 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ACTG1P63261 375 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 LSM11P83369 360 aaKnown RBP eCLIP14.95□□□□□ -0.026e-6■■■□□ 16.2
CUX1-213ENST00000549414 SLC22A6Q4U2R8 563 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ATAD3CQ5T2N8 411 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 APOOLQ6UXV4 268 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ZNF704Q6ZNC4 412 aaPredicted RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 CFAP77Q6ZQR2 320 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ESPNLQ6ZVH7 1005 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 OR5M1Q8NGP8 315 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 SLC2A12Q8TD20 617 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 NEDD4LQ96PU5 975 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 HCAR1Q9BXC0 346 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 NDUFB11Q9NX14 153 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 ABRACLQ9P1F3 81 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 NSG1A0A0A6YYJ2 146 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 A0A1B0GX78 115 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 F5H0A9 414 aaPredicted RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 ARG2P78540 354 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 DCDP81605 110 aaKnown RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 MPEG1Q2M385 716 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 SFTPA2Q8IWL1 248 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 CLEC1AQ8NC01 280 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 RADILQ96JH8 1075 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 RBFOX1Q9NWB1 397 aaKnown RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 ING1Q9UK53 422 aaPredicted RBP14.95□□□□□ -0.02
CUX1-213ENST00000549414 POLHQ9Y253 713 aa14.95□□□□□ -0.02
CUX1-213ENST00000549414 TFP02787 698 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 SSTR2P30874 369 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 NKAIN1Q4KMZ8 207 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 VASH1Q7L8A9 365 aaPredicted RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 CD163Q86VB7 1156 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 ACBD4Q8NC06 268 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 ELMOD3Q96FG2 381 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 OR2A5Q96R48 311 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 SLC6A14Q9UN76 642 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 APEHP13798 732 aaKnown RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 MTNR1BP49286 362 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 POLR2HP52434 150 aaKnown RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 LIPNQ5VXI9 398 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 GDPD3Q7L5L3 318 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 SCGB3A2Q96PL1 93 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 NRIP3Q9NQ35 241 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 FBXO8Q9NRD0 319 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 TRAV36DV7A0A075B6V5 113 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 A0A0B4J203 849 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 K7EQS6 105 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms