RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, human

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF1A-215	ENST00000543359	COL6A5	A8TX70	2615 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF587B	E7ETH6	402 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	LRRN3	E7EW58	273 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	HLA-DOB	P13765	273 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF43	P17038	809 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CDH2	P19022	906 aa	Predicted RBP	11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PRPS1	P60891	318 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	KLF10	Q13118	480 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ETFDH	Q16134	617 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CLEC12B	Q2HXU8	276 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	COQ5	Q5HYK3	327 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PHYHD1	Q5SRE7	291 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF613	Q6PF04	617 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SLC22A25	Q6T423	547 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CCDC80	Q76M96	950 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SCAI	Q8N9R8	606 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	MAGEE2	Q8TD90	523 aa	Predicted RBP	11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	OR2M2	Q96R28	347 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	MCHR1	Q99705	422 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PCDHAC1	Q9H158	963 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	OBP2B	Q9NPH6	170 aa		11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CRNN	Q9UBG3	495 aa	Predicted RBP	11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	GDF2	Q9UK05	429 aa	Predicted RBP	11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	FBN1	P35555	2871 aa	Known RBP	11.44	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ARPC4-TTLL3	A0A0A6YYG9	625 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	IGHV1-18	A0A0C4DH31	117 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	FAM171A2	A8MVW0	826 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CBL	P22681	906 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ACVR1B	P36896	505 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ARFIP2	P53365	341 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ARF1	P84077	181 aa	Known RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	GUCY1A3	Q02108	690 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	MFSD13A	Q14CX5	517 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	VMAC	Q2NL98	169 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	MST1L	Q2TV78	715 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	RABL3	Q5HYI8	236 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	AGAP6	Q5VW22	663 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PATL1	Q86TB9	770 aa	Known RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	RANBP3L	Q86VV4	465 aa	Predicted RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SLC30A8	Q8IWU4	369 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	MUC15	Q8N387	334 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	GTPBP3	Q969Y2	492 aa	Known RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	LRRC58	Q96CX6	371 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	TRMT61A	Q96FX7	289 aa	Known RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	TXNDC15	Q96J42	360 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF583	Q96ND8	569 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF317	Q96PQ6	595 aa	Predicted RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF426	Q9BUY5	554 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CCDC134	Q9H6E4	229 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	GPR35	Q9HC97	309 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CBLN4	Q9NTU7	201 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	FAIM	Q9NVQ4	179 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	MRPL39	Q9NYK5	338 aa	Known RBP	11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SLC13A4	Q9UKG4	626 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	USP22	Q9UPT9	525 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CORIN	Q9Y5Q5	1042 aa		11.43	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359		A0A096LPE4	126 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359		A0A1W2PPZ6	126 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF503-AS2	A6NEH8	195 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ATP6V1G2-DDX39B	F2Z307	99 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PLPP3	O14495	311 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CHP2	O43745	196 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	KRT33A	O76009	404 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	WNT11	O96014	354 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	NPPA	P01160	153 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	IGLV1-44	P01699	117 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	HOXB1	P14653	301 aa	Predicted RBP	11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	GTF2E2	P29084	291 aa	Known RBP	11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	FABP6	P51161	128 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SH3BGR	P55822	239 aa	Predicted RBP	11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	NCALD	P61601	193 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	TUBA1B	P68363	451 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	TUBA4A	P68366	448 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ROR2	Q01974	943 aa	Known RBP	11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SF3A3	Q12874	501 aa	Known RBP eCLIP	11.42	□□□□□ -0.58	3e-6	■■■□□ 16.5
TNFRSF1A-215	ENST00000543359	CYLC2	Q14093	348 aa	Predicted RBP	11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	C3orf36	Q3SXR2	165 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ENTPD8	Q5MY95	495 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ZNF544	Q6NX49	715 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	ANKRD16	Q6P6B7	361 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	TUBA1A	Q71U36	451 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	C20orf196	Q8IYI0	205 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	FAM169B	Q8N8A8	192 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	OR8J3	Q8NGG0	315 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	EPYC	Q99645	322 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PRSS27	Q9BQR3	290 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	CACNG6	Q9BXT2	260 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SEC61A2	Q9H9S3	476 aa		11.42	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	RNF223	E7ERA6	249 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SLC43A1	O75387	559 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	IGKV3-15	P01624	115 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	TROVE2	P10155	538 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PUDP	Q08623	228 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	C1D	Q13901	141 aa	Known RBP	11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	SWI5	Q1ZZU3	235 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	REP15	Q6BDI9	236 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	HMBOX1	Q6NT76	420 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	PXK	Q7Z7A4	578 aa		11.41	□□□□□ -0.58
TNFRSF1A-215	ENST00000543359	MYPOP	Q86VE0	399 aa	Predicted RBP	11.41	□□□□□ -0.58

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