RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SEC24CP53992 1094 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 CLNS1AP54105 237 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 LMO4P61968 165 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 TXNL4AP83876 142 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 SHQ1Q6PI26 577 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 CLIP4Q8N3C7 705 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 GPR137CQ8N3F9 429 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 EIF1ADQ8N9N8 165 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 STK35Q8TDR2 534 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 SLC25A36Q96CQ1 311 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 C20orf27Q9GZN8 174 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 MS4A5Q9H3V2 200 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 ZNF275Q9NSD4 429 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 MYEF2Q9P2K5 600 aaKnown RBP15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 USP22Q9UPT9 525 aa15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 ZNF443Q9Y2A4 671 aaPredicted RBP15.3■□□□□ 0.04
CLSTN3-214ENST00000542663 ZNF99A8MXY4 864 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 TRIM77I1YAP6 450 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 NCR1O76036 304 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 AHSA1O95433 338 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 EPHA1P21709 976 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 ALDH3B1P43353 468 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 CAPZA2P47755 286 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 MVDP53602 400 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 COPZ1P61923 177 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 SCGB2A2Q13296 93 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 LIN52Q52LA3 116 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 RNF220Q5VTB9 566 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 ATG16L1Q676U5 607 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 SERPINA11Q86U17 422 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 LRP11Q86VZ4 500 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 CCDC36Q8IYA8 594 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 TMEM123Q8N131 208 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 OR51F2Q8NH61 342 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 RDH5Q92781 318 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 KTI12Q96EK9 354 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 OXGR1Q96P68 337 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 OR2M2Q96R28 347 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 PANX1Q96RD7 426 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 SYT3Q9BQG1 590 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 G6PC2Q9NQR9 355 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 SLC6A13Q9NSD5 602 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 LGALS13Q9UHV8 139 aa15.29■□□□□ 0.04
CLSTN3-214ENST00000542663 RP2O75695 350 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 PNPP00491 289 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 HLA-HP01893 362 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 ZNF14P17017 642 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 NCF2P19878 526 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 IL12AP29459 219 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 ANXA11P50995 505 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 NME5P56597 212 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 UFM1P61960 85 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 MAD2L1BPQ15013 274 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 CHI3L2Q15782 390 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 FAHD2BQ6P2I3 314 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 ZNF621Q6ZSS3 439 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 LRRC34Q8IZ02 419 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 RIBC1Q8N443 379 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 TRIML2Q8N7C3 387 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 KIF18AQ8NI77 898 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 FAHD2AQ96GK7 314 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 PKNOX2Q96KN3 472 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 RBM4Q9BWF3 364 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 ZNF224Q9NZL3 707 aa15.28■□□□□ 0.04
CLSTN3-214ENST00000542663 TANC2Q9HCD6 1990 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 LOC105371242A0A075B767 164 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 TRAV20A0A0B4J274 112 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 TRAF3IP2O43734 574 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 TYROBPO43914 113 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 ALDOCP09972 364 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 GLRXP35754 106 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 TMEM33P57088 247 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 FXNQ16595 210 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 GSG1Q2KHT4 349 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 AWAT1Q58HT5 328 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 RPS26P11Q5JNZ5 115 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 PIK3C3Q8NEB9 887 aa15.27■□□□□ 0.04
CLSTN3-214ENST00000542663 TRRAPQ9Y4A5 3859 aa15.27■□□□□ 0.03
CLSTN3-214ENST00000542663 M0R082 166 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 M0R3G1 203 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 BCHEP06276 602 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 MYZAPP0CAP1 466 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 LBPP18428 481 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 HOXC5Q00444 222 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 PIGFQ07326 219 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 PRR31Q5SQ13 230 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 NUDCD3Q8IVD9 361 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 WDFY1Q8IWB7 410 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 ZNF417Q8TAU3 575 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 SLC38A5Q8WUX1 472 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 TAAR8Q969N4 342 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 OR52E6Q96RD3 313 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 ZNF587Q96SQ5 575 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 SORT1Q99523 831 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 NUF2Q9BZD4 464 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 ESM1Q9NQ30 184 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 P2RX2Q9UBL9 471 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 FZR1Q9UM11 496 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 RAP2CQ9Y3L5 183 aa15.26■□□□□ 0.03
CLSTN3-214ENST00000542663 LOC102725191A0A1B0GVB3 256 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms