RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HS3ST5Q8IZT8 346 aa15.23■□□□□ 0.03
LIG1-204ENST00000542460 PQLC1Q8N2U9 271 aa15.23■□□□□ 0.03
LIG1-204ENST00000542460 OR13C2Q8NGS9 318 aa15.23■□□□□ 0.03
LIG1-204ENST00000542460 SFXN3Q9BWM7 321 aa15.23■□□□□ 0.03
LIG1-204ENST00000542460 COQ3Q9NZJ6 369 aa15.23■□□□□ 0.03
LIG1-204ENST00000542460 SIGLEC7Q9Y286 467 aa15.23■□□□□ 0.03
LIG1-204ENST00000542460 FLVCR1Q9Y5Y0 555 aa15.23■□□□□ 0.03
LIG1-204ENST00000542460 TRAV27A0A087WT01 109 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 RNF13O43567 381 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 BAG2O95816 211 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 IL18BPO95998 194 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ADAP00813 363 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ANXA8P13928 327 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 POU2F1P14859 743 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 PRKACGP22612 351 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 AGTR1P30556 359 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 OPRM1P35372 400 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 KIR2DL2P43627 348 aaPredicted RBP15.22■□□□□ 0.03
LIG1-204ENST00000542460 FHL1Q13642 323 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 CREB3L2Q70SY1 520 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 GALNT5Q7Z7M9 940 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 CNEP1R1Q8N9A8 125 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ANKK1Q8NFD2 765 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ZNF775Q96BV0 537 aaPredicted RBP15.22■□□□□ 0.03
LIG1-204ENST00000542460 RNF6Q9Y252 685 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 MAGED1Q9Y5V3 778 aaPredicted RBP15.22■□□□□ 0.03
LIG1-204ENST00000542460 MPDZO75970 2070 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 C11orf98E9PRG8 122 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 TNFSF13O75888 250 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 GSTM3P21266 225 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 CHRNB4P30926 498 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 SIRPAP78324 504 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 COX10Q12887 443 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ALG10Q5BKT4 473 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 CD300LDQ6UXZ3 194 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 EPHX4Q8IUS5 362 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 CCDC71Q8IV32 467 aaPredicted RBP15.22■□□□□ 0.03
LIG1-204ENST00000542460 ZIC4Q8N9L1 334 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ICA1LQ8NDH6 482 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 OR6K3Q8NGY3 331 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 MOSPD2Q8NHP6 518 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ASB5Q8WWX0 329 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 GTPBP3Q969Y2 492 aaKnown RBP15.22■□□□□ 0.03
LIG1-204ENST00000542460 SDCCAG3Q96C92 435 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 NDEL1Q9GZM8 345 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 ZNF556Q9HAH1 456 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 MCCC2Q9HCC0 563 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 PARPBPQ9NWS1 579 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 OAZ3Q9UMX2 235 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 NOSIPQ9Y314 301 aaKnown RBP15.22■□□□□ 0.03
LIG1-204ENST00000542460 KIAA1549Q9HCM3 1950 aa15.22■□□□□ 0.03
LIG1-204ENST00000542460 DVL2O14641 736 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 HLA-DOBP13765 273 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 POU3F1Q03052 451 aaPredicted RBP15.21■□□□□ 0.03
LIG1-204ENST00000542460 RCN1Q15293 331 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 NHLRC1Q6VVB1 395 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 STK32CQ86UX6 486 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 ATG16L2Q8NAA4 619 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 TMEM45BQ96B21 275 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 STARD4Q96DR4 205 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 ZNF385AQ96PM9 386 aaKnown RBP15.21■□□□□ 0.03
LIG1-204ENST00000542460 NIPSNAP1Q9BPW8 284 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 UCK2Q9BZX2 261 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 DCLRE1BQ9H816 532 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 INIPQ9NRY2 104 aa15.21■□□□□ 0.03
LIG1-204ENST00000542460 RRP15Q9Y3B9 282 aaKnown RBP15.21■□□□□ 0.03
LIG1-204ENST00000542460 COL12A1Q99715 3063 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 A0A1W2PRG6 482 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 TRAF3IP2O43734 574 aaPredicted RBP15.2■□□□□ 0.02
LIG1-204ENST00000542460 MRPL33O75394 65 aaKnown RBP15.2■□□□□ 0.02
LIG1-204ENST00000542460 SERPINI2O75830 405 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 NDUFB2O95178 105 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 F13BP05160 661 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 ANPEPP15144 967 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 AGAP20933 346 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 BMP5P22003 454 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 FAHD1Q6P587 224 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 VWA1Q6PCB0 445 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 SMARCD3Q6STE5 483 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 RASSF6Q6ZTQ3 369 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 NUFIP2Q7Z417 695 aaKnown RBP15.2■□□□□ 0.02
LIG1-204ENST00000542460 DNAJC9Q8WXX5 260 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 OSBPL10Q9BXB5 764 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 GABARAPL1Q9H0R8 117 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 PLSCR4Q9NRQ2 329 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 KIF17Q9P2E2 1029 aa15.2■□□□□ 0.02
LIG1-204ENST00000542460 PHF3Q92576 2039 aaKnown RBP15.19■□□□□ 0.02
LIG1-204ENST00000542460 SAC3D1A6NKF1 404 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 ZG16O60844 167 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 CD8BP10966 210 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 ZNF26P17031 533 aaPredicted RBP15.19■□□□□ 0.02
LIG1-204ENST00000542460 NTF4P34130 210 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 RPL4P36578 427 aaKnown RBP15.19■□□□□ 0.02
LIG1-204ENST00000542460 CLDN17P56750 224 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 FXYD6P3P58550 94 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 RFX4Q33E94 735 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 RPL13AP3Q6NVV1 102 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 XKRXQ6PP77 449 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 ZNF620Q6ZNG0 422 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 SLC35D2Q76EJ3 337 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms