RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 GMEB2Q9UKD1 530 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 FMO6PO60774 539 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 NME1P15531 152 aaKnown RBP15.37■□□□□ 0.05
USP28-208ENST00000540438 IL12BP29460 328 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 CSF2RBP32927 897 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 DIO1P49895 249 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 GPR143P51810 404 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 NRG3P56975 720 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 FOXK1P85037 733 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 FUT7Q11130 342 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 ZNF141Q15928 474 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 BTBD16Q32M84 506 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.37■□□□□ 0.05
USP28-208ENST00000540438 NANOGNBQ7Z5D8 188 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 GKN2Q86XP6 184 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 C9orf40Q8IXQ3 194 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 CMTM4Q8IZR5 234 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 CHIAQ9BZP6 476 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 AKIRIN1Q9H9L7 192 aaPredicted RBP15.37■□□□□ 0.05
USP28-208ENST00000540438 ZNF337Q9Y3M9 751 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 NOX1Q9Y5S8 564 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 MN1Q10571 1320 aaPredicted RBP15.37■□□□□ 0.05
USP28-208ENST00000540438 NDUFB5O43674 189 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 ZNF74Q16587 644 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 TRILQ7L0X0 811 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 SLC35F3Q8IY50 421 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 TOMM5Q8N4H5 51 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 SLC38A9Q8NBW4 561 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 SMIM19Q96E16 107 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 NRIP3Q9NQ35 241 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 UBQLN4Q9NRR5 601 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 RXFP3Q9NSD7 469 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 SLC22A13Q9Y226 551 aa15.37■□□□□ 0.05
USP28-208ENST00000540438 MASP2O00187 686 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 GMDSO60547 372 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 EIF1AXP47813 144 aaKnown RBP15.36■□□□□ 0.05
USP28-208ENST00000540438 GABRA4P48169 554 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 CCR5P51681 352 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 MESTQ5EB52 335 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 HLA-DQA1Q5Y7H0 255 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 LINC00114Q6XXX2 140 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 SYT13Q7L8C5 426 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 GPALPP1Q8IXQ4 340 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 ASCC1Q8N9N2 400 aaKnown RBP15.36■□□□□ 0.05
USP28-208ENST00000540438 TSPAN32Q96QS1 320 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 MMP25Q9NPA2 562 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 EIF1AYO14602 144 aaKnown RBP15.36■□□□□ 0.05
USP28-208ENST00000540438 PRKCAP17252 672 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 SRMP19623 302 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 SKP2Q13309 424 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 LRRC28Q86X40 367 aaPredicted RBP15.36■□□□□ 0.05
USP28-208ENST00000540438 ZNF687Q8N1G0 1237 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 TBL1XR1Q9BZK7 514 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 TEKT2Q9UIF3 430 aa15.36■□□□□ 0.05
USP28-208ENST00000540438 METTL12A8MUP2 240 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 H3BML4 177 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 TIAF1O95411 115 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 CXCR1P25024 350 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 SSTR2P30874 369 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 ACSM1Q08AH1 577 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 PLCXD2Q0VAA5 305 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 MANEAQ5SRI9 462 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 LINC01590Q5TEZ4 76 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 TDHQ8IZJ6 230 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 TRIM63Q969Q1 353 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 ZMAT3Q9HA38 289 aaKnown RBP15.35■□□□□ 0.05
USP28-208ENST00000540438 LIN7BQ9HAP6 207 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 ANKRD10Q9NXR5 420 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 CACNG2Q9Y698 323 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 TRAV8-7A0A075B6U6 113 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 MBTPS2O43462 519 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 OR2T7P0C7T2 308 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 FAM157BP0CG42 384 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 BTCP35070 178 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 RPL13AP3Q6NVV1 102 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 ATG4DQ86TL0 474 aaPredicted RBP15.35■□□□□ 0.05
USP28-208ENST00000540438 SDR16C5Q8N3Y7 309 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 SLC25A45Q8N413 288 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 OR2T27Q8NH04 317 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 WDR89Q96FK6 387 aaPredicted RBP15.35■□□□□ 0.05
USP28-208ENST00000540438 NDEL1Q9GZM8 345 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 MRM2Q9UI43 246 aaKnown RBP15.35■□□□□ 0.05
USP28-208ENST00000540438 RCE1Q9Y256 329 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 CFAP47Q6ZTR5 3102 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 A0A1W2PR77 199 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 FABP7O15540 132 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 CD27P26842 260 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 SF3A2Q15428 464 aaKnown RBP15.35■□□□□ 0.05
USP28-208ENST00000540438 SLC36A2Q495M3 483 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 DPY19L2P2Q6ZN68 376 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 TMPRSS12Q86WS5 348 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 WDFY1Q8IWB7 410 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 UXS1Q8NBZ7 420 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 OR10A4Q9H209 315 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 FRRS1LQ9P0K9 344 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 SERTAD3Q9UJW9 196 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 ADAM30Q9UKF2 790 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 PCDHGB7Q9Y5F8 929 aa15.35■□□□□ 0.05
USP28-208ENST00000540438 DDAH2O95865 285 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 HIST1H2ABP04908 130 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms