RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 ARL2BPQ9Y2Y0 163 aa13.22□□□□□ -0.29
UBE3B-212ENST00000540230 RNF115Q9Y4L5 304 aa13.22□□□□□ -0.29
UBE3B-212ENST00000540230 CORINQ9Y5Q5 1042 aa13.22□□□□□ -0.29
UBE3B-212ENST00000540230 MED13LQ71F56 2210 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 LOC102725191A0A1B0GVB3 256 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 J3KTA2 159 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 PLPP3O14495 311 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 IFNA14P01570 189 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 LSM11P83369 360 aaKnown RBP eCLIP13.21□□□□□ -0.29
UBE3B-212ENST00000540230 POU3F1Q03052 451 aaPredicted RBP13.21□□□□□ -0.29
UBE3B-212ENST00000540230 PUDPQ08623 228 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 SPOCK1Q08629 439 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 PMS2P3Q13401 168 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 C1DQ13901 141 aaKnown RBP13.21□□□□□ -0.29
UBE3B-212ENST00000540230 MFSD13AQ14CX5 517 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 HIKESHIQ53FT3 197 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 PHYHD1Q5SRE7 291 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 SLC46A3Q7Z3Q1 461 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 P2RY8Q86VZ1 359 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 KRTAP1-3Q8IUG1 177 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 UEVLDQ8IX04 471 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 TMEM123Q8N131 208 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 RNF148Q8N7C7 305 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 RBM15BQ8NDT2 890 aaKnown RBP13.21□□□□□ -0.29
UBE3B-212ENST00000540230 OR5J2Q8NH18 312 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 IGFBPL1Q8WX77 278 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 ZNF837Q96EG3 531 aaPredicted RBP13.21□□□□□ -0.29
UBE3B-212ENST00000540230 TXNDC15Q96J42 360 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 MPP4Q96JB8 637 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 OR2M2Q96R28 347 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 NELFAQ9H3P2 528 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 ESRP2Q9H6T0 727 aaKnown RBP13.21□□□□□ -0.29
UBE3B-212ENST00000540230 NGBQ9NPG2 151 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 SLC17A5Q9NRA2 495 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 EGFL7Q9UHF1 273 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 RIMS3Q9UJD0 308 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 A4GNTQ9UNA3 340 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 EDARQ9UNE0 448 aa13.21□□□□□ -0.29
UBE3B-212ENST00000540230 C11orf98E9PRG8 122 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 HS3ST1O14792 307 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 SERPINI2O75830 405 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 KRT33AO76009 404 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 OR5F1O95221 314 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 MT-ATP6P00846 226 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 SERPINA1P01009 418 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 CD3EP07766 207 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 YAP1P46937 504 aaKnown RBP13.2□□□□□ -0.3
UBE3B-212ENST00000540230 ZNF83P51522 516 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 ROR2Q01974 943 aaKnown RBP13.2□□□□□ -0.3
UBE3B-212ENST00000540230 OR7E24Q6IFN5 339 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 CBLL1Q75N03 491 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 FAM156AQ8NDB6 213 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 C1orf162Q8NEQ5 155 aaPredicted RBP13.2□□□□□ -0.3
UBE3B-212ENST00000540230 CCL19Q99731 98 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 KCTD14Q9BQ13 255 aaPredicted RBP13.2□□□□□ -0.3
UBE3B-212ENST00000540230 LINC00470Q9BZP3 86 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 C20orf141Q9NUB4 165 aa13.2□□□□□ -0.3
UBE3B-212ENST00000540230 SHISA9B4DS77 424 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 ZNF587BE7ETH6 402 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 GSTA4O15217 222 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 PIP5K1CO60331 668 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 ZNF682O95780 498 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 ASAH2BP0C7U1 165 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 ADORA3P0DMS8 318 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 AHCYP23526 432 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 CARD17Q5XLA6 110 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 C20orf204Q6ZNR8 217 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 C17orf78Q8N4C9 275 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 OR1K1Q8NGR3 316 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 HSH2DQ96JZ2 352 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 LRRC37BQ96QE4 947 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 CCT8L2Q96SF2 557 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 SLC19A3Q9BZV2 496 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 FKRPQ9H9S5 495 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 SPAG4Q9NPE6 437 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 NANSQ9NR45 359 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 TAS2R5Q9NYW4 299 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 RHCGQ9UBD6 479 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 ARID1AO14497 2285 aa13.19□□□□□ -0.3
UBE3B-212ENST00000540230 SLC35F4A4IF30 521 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 M0R1B8 84 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 ABCD4O14678 606 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 FFAR1O14842 300 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 SLC43A1O75387 559 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 MT-ND1P03886 318 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 ADAM8P78325 824 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 TGFBR3Q03167 851 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 TBRG1Q3YBR2 411 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 ZNF672Q499Z4 452 aaPredicted RBP13.18□□□□□ -0.3
UBE3B-212ENST00000540230 TSEN54Q7Z6J9 526 aaKnown RBP13.18□□□□□ -0.3
UBE3B-212ENST00000540230 ZNF611Q8N823 705 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 WFDC11Q8NEX6 87 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 TMEM239Q8WW34 195 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 PRRC1Q96M27 445 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 POLR2J2Q9GZM3 115 aaKnown RBP13.18□□□□□ -0.3
UBE3B-212ENST00000540230 POLR2J3Q9H1A7 115 aaKnown RBP13.18□□□□□ -0.3
UBE3B-212ENST00000540230 GPR35Q9HC97 309 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 MAN2C1Q9NTJ4 1040 aa13.18□□□□□ -0.3
UBE3B-212ENST00000540230 BEX4Q9NWD9 120 aaPredicted RBP13.18□□□□□ -0.3
UBE3B-212ENST00000540230 FAM53CQ9NYF3 392 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms