RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 GK3PQ14409 553 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 PLPPR5Q32ZL2 321 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 SWT1Q5T5J6 900 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 ZNF730Q6ZMV8 503 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 ATP6V1C2Q8NEY4 427 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 C3orf49Q96BT1 292 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 MPP4Q96JB8 637 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 MRGPRX4Q96LA9 322 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 SFXN2Q96NB2 322 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 EPYCQ99645 322 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 OPN3Q9H1Y3 402 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 SLCO5A1Q9H2Y9 848 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 ANKRD19PQ9H560 264 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 RNPEPL1Q9HAU8 725 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 TMEM160Q9NX00 188 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 KIF17Q9P2E2 1029 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 STX18Q9P2W9 335 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 STOML1Q9UBI4 398 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 LAMP3Q9UQV4 416 aa11.09□□□□□ -0.63
CLSTN3-208ENST00000538933 TMED7-TICAM2A0A0A6YYA0 188 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 SAC3D1A6NKF1 404 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 FFAR1O14842 300 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 SPRY1O43609 319 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 OR10H3O60404 316 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 SMNDC1O75940 238 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 CCNB2O95067 398 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 TFPIP10646 304 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 IFNGR2P38484 337 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 STARP49675 285 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 GFRA1P56159 465 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 SRYQ05066 204 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 SLC34A1Q06495 639 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 PPP1R8Q12972 351 aaKnown RBP11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 TRIP10Q15642 601 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 EXOC3L2Q2M3D2 409 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 ANKRD34AQ69YU3 496 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 CDK20Q8IZL9 346 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 SVOPLQ8N434 492 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 LINC00471Q8N535 108 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 OR5M1Q8NGP8 315 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 OR5K1Q8NHB7 308 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 LILRB1Q8NHL6 650 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 HS6ST2Q96MM7 605 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 BEX2Q9BXY8 128 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 C12orf10Q9HB07 376 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 TMED7Q9Y3B3 224 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 MED31Q9Y3C7 131 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 CADP27708 2225 aa11.08□□□□□ -0.64
CLSTN3-208ENST00000538933 TRBV4-1A0A0J9YWV2 114 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 A0A1W2PRQ8 180 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 SHISA8B8ZZ34 492 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 G3V2T6 193 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 H3BML4 177 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 KPNA4O00629 521 aaPredicted RBP11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 IGHV4-39P01824 125 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 DANCRP0C864 163 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 POU2F1P14859 743 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 ZNF17P17021 662 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 PTNP21246 168 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 ADH6P28332 368 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 LHX2P50458 406 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 CLDN18P56856 261 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 RPS4XP62701 263 aaKnown RBP11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 SELENBP1Q13228 472 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 DGCR6Q14129 220 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 GLYR1Q49A26 553 aaPredicted RBP11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 IQCCQ4KMZ1 466 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 BEX5Q5H9J7 111 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 C3orf33Q6P1S2 294 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 TSEN54Q7Z6J9 526 aaKnown RBP11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 ZDHHC13Q8IUH4 622 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 NKAIN4Q8IVV8 208 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 C10orf53Q8N6V4 93 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 PIGXQ8TBF5 258 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 GIPC3Q8TF64 312 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 TMEM239Q8WW34 195 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 ACOT11Q8WXI4 607 aaPredicted RBP11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 EME1Q96AY2 570 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 DDIT4LQ96D03 193 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 KLHDC3Q9BQ90 382 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 C9orf16Q9BUW7 83 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 KLHL4Q9C0H6 718 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 OR2B2Q9GZK3 357 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 VCXQ9H320 206 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 VCX3BQ9H321 246 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 PDP1Q9P0J1 537 aaPredicted RBP11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 OSGIN1Q9UJX0 560 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 MRPS18CQ9Y3D5 142 aaKnown RBP11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 LYVE1Q9Y5Y7 322 aa11.07□□□□□ -0.64
CLSTN3-208ENST00000538933 A0A087WUJ7 227 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 GJE1A6NN92 205 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 NDUFS7O75251 213 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 PRSS23O95084 383 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 AHSA1O95433 338 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 SOD3P08294 240 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 PEPDP12955 493 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 ELK4P28324 431 aa11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 GTF2E2P29084 291 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-208ENST00000538933 RBM34P42696 430 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms