RNA–Protein interactions for RNA: ENST00000529540.5

NR1H3-231, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 1,673 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-231	ENST00000529540	DND1	Q8IYX4	353 aa	Known RBP	13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ELMOD2	Q8IZ81	293 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ZNF321P	Q8N8H1	164 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ZFP41	Q8N8Y5	198 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	CDS1	Q92903	461 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	SLC35A4	Q96G79	324 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	CYSLTR2	Q9NS75	346 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	TEKT2	Q9UIF3	430 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	HSPB11	Q9Y547	144 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	SURF4	O15260	269 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	RGS9	O75916	674 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	NAGA	P17050	411 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	EVI2B	P34910	448 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	OMP	P47874	163 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	RFX3	P48380	749 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	LSM11	P83369	360 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	FUT5	Q11128	374 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	CHAF1B	Q13112	559 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	GPR176	Q14439	515 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ZNF57	Q68EA5	555 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	TMEM91	Q6ZNR0	172 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	LRRC28	Q86X40	367 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ARMC10	Q8N2F6	343 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ZNF441	Q8N8Z8	693 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	OR5M3	Q8NGP4	307 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	PIGX	Q8TBF5	258 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	OSTF1	Q92882	214 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	TMED9	Q9BVK6	235 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	PRR14	Q9BWN1	585 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	TEX12	Q9BXU0	123 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	MYOT	Q9UBF9	498 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ZNF223	Q9UK11	482 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	ELF5	Q9UKW6	265 aa	Predicted RBP	13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	GPR52	Q9Y2T5	361 aa		13.28	□□□□□ -0.28
NR1H3-231	ENST00000529540	LOC105371267	A0A1B0GV96	52 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	LEUTX	A8MZ59	168 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	TLX3	O43711	291 aa	Predicted RBP	13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	NCR1	O76036	304 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	CD53	P19397	219 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	ELK1	P19419	428 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	FPR3	P25089	353 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	RNF144A	P50876	292 aa	Predicted RBP	13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	UCN	P55089	124 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	MADCAM1	Q13477	382 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	PGGHG	Q32M88	737 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	HSD17B12	Q53GQ0	312 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	SMUG1	Q53HV7	270 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	HBM	Q6B0K9	141 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	ZNF322	Q6U7Q0	402 aa	Predicted RBP	13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	LRRC69	Q6ZNQ3	347 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	SHF	Q7M4L6	423 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	LHFPL3	Q86UP9	236 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	OR4Q3	Q8NH05	313 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	SPRYD4	Q8WW59	207 aa	Predicted RBP	13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	DIO2	Q92813	273 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	CITED4	Q96RK1	184 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	ZNF350	Q9GZX5	532 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	NXF5	Q9H1B4	397 aa	Known RBP	13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	EXTL2	Q9UBQ6	330 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	DTX4	Q9Y2E6	619 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	WDR45	Q9Y484	360 aa		13.27	□□□□□ -0.29
NR1H3-231	ENST00000529540	CCDC88C	Q9P219	2028 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540		J3QRE1	110 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	GTPBP1	O00178	669 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	TPD52L2	O43399	206 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	KLF4	O43474	513 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	CHP2	O43745	196 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	IL12B	P29460	328 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	IFNA8	P32881	189 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	EIF2S3	P41091	472 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	NR0B1	P51843	470 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	CTBP2	P56545	445 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	SOX8	P57073	446 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	TAS2R41	P59536	307 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	SNRPD2	P62316	118 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	ZBTB37	Q5TC79	503 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	NPSR1	Q6W5P4	371 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	RFT1	Q96AA3	541 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	SCMH1	Q96GD3	660 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	SDF2	Q99470	211 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	MESP1	Q9BRJ9	268 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	WAC	Q9BTA9	647 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	HDHD5	Q9BXW7	423 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	KCNN2	Q9H2S1	579 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	MTHFD2L	Q9H903	347 aa	Predicted RBP	13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	ABI3	Q9P2A4	366 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	EIF3K	Q9UBQ5	218 aa	Known RBP	13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	SLC23A1	Q9UHI7	598 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	ING4	Q9UNL4	249 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	SSUH2	Q9Y2M2	353 aa		13.26	□□□□□ -0.29
NR1H3-231	ENST00000529540	CD8B2	A6NJW9	211 aa		13.25	□□□□□ -0.29
NR1H3-231	ENST00000529540	SMLR1	H3BR10	107 aa		13.25	□□□□□ -0.29
NR1H3-231	ENST00000529540	RNF13	O43567	381 aa		13.25	□□□□□ -0.29
NR1H3-231	ENST00000529540	IL33	O95760	270 aa		13.25	□□□□□ -0.29
NR1H3-231	ENST00000529540	HMGN1	P05114	100 aa		13.25	□□□□□ -0.29
NR1H3-231	ENST00000529540	CD8B	P10966	210 aa		13.25	□□□□□ -0.29
NR1H3-231	ENST00000529540	CEL	P19835	753 aa		13.25	□□□□□ -0.29
NR1H3-231	ENST00000529540	PNLIPRP2	P54317	469 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms