RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CLPTM1LQ96KA5 538 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 HS6ST2Q96MM7 605 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 PSD2Q9BQI7 771 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 BDH2Q9BUT1 245 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 ZNF426Q9BUY5 554 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 PTDSS2Q9BVG9 487 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 ASPNQ9BXN1 380 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 BCO1Q9HAY6 547 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 FANCFQ9NPI8 374 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 A4GNTQ9UNA3 340 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 CORINQ9Y5Q5 1042 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 ZANQ9Y493 2812 aa8.98□□□□□ -0.97
VPS28-204ENST00000526054 IGKV3D-15A0A087WSY6 115 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 TRIM64A6NGJ6 449 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 TRIM64BA6NI03 449 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 J3KTA2 159 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 hCG_2039718K7EN88 272 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 KPNA4O00629 521 aaPredicted RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 FZD7O75084 574 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 VAMP5O95183 116 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 MT-ATP6P00846 226 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 BGLAPP02818 100 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 FABP3P05413 133 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 NQO1P15559 274 aaKnown RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 PPP3CBP16298 524 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 RHCEP18577 417 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 PTNP21246 168 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 LOXP28300 417 aaPredicted RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 PCSK6P29122 969 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 GRPRP30550 384 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 PTH2RP49190 550 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 BEX5Q5H9J7 111 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 TMEM225Q6GV28 225 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 PGM2L1Q6PCE3 622 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 GALNT5Q7Z7M9 940 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 LSRQ86X29 649 aaPredicted RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 NKAIN4Q8IVV8 208 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 CCDC103Q8IW40 242 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 TUSC5Q8IXB3 177 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 FAM86B1Q8N7N1 296 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 TMEM99Q8N816 258 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 SCAIQ8N9R8 606 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 ADPRHL1Q8NDY3 354 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 TMEM239Q8WW34 195 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 TAAR8Q969N4 342 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 ZNF300Q96RE9 604 aaPredicted RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 PRSS27Q9BQR3 290 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 SF3B5Q9BWJ5 86 aaKnown RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 CADM1Q9BY67 442 aaKnown RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 GSX2Q9BZM3 304 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 ANKRD19PQ9H560 264 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 MAGIXQ9H6Y5 334 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 RASD1Q9Y272 281 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 B3GALT5Q9Y2C3 310 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 RRP15Q9Y3B9 282 aaKnown RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 MED31Q9Y3C7 131 aa8.97□□□□□ -0.97
VPS28-204ENST00000526054 ANK3Q12955 4377 aaKnown RBP8.97□□□□□ -0.97
VPS28-204ENST00000526054 FREM1Q5H8C1 2179 aa8.96□□□□□ -0.97
VPS28-204ENST00000526054 PRR14LQ5THK1 2151 aa8.96□□□□□ -0.97
VPS28-204ENST00000526054 JMJD1CQ15652 2540 aa8.96□□□□□ -0.97
VPS28-204ENST00000526054 HTR3EA5X5Y0 456 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 AQP12BA6NM10 295 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 ZNF716A6NP11 495 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 ZNF814B7Z6K7 855 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 M0R082 166 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 RAMP1O60894 148 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 CIB2O75838 187 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 IGF2P01344 180 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 MT-ND1P03886 318 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 SEMG1P04279 462 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 HIST1H2ABP04908 130 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 THBDP07204 575 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 H1F0P07305 194 aaKnown RBP8.96□□□□□ -0.98
VPS28-204ENST00000526054 UMPSP11172 480 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 UGT2B15P54855 530 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 NR1H2P55055 460 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 SMIM11AP58511 58 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 VLDLRP98155 873 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 MS4A2Q01362 244 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 IL1RL1Q01638 556 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 CHRNB3Q05901 458 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 FLOT2Q14254 428 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 ZNF74Q16587 644 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 FAM98BQ52LJ0 330 aaKnown RBP8.96□□□□□ -0.98
VPS28-204ENST00000526054 ZNF704Q6ZNC4 412 aaPredicted RBP8.96□□□□□ -0.98
VPS28-204ENST00000526054 C22orf34Q6ZV56 151 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 H1FNTQ75WM6 255 aaPredicted RBP8.96□□□□□ -0.98
VPS28-204ENST00000526054 HIST3H2AQ7L7L0 130 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 GPAT4Q86UL3 456 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 AQP12AQ8IXF9 295 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 PIK3C3Q8NEB9 887 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 OR9K2Q8NGE7 335 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 ZNF417Q8TAU3 575 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 TMEM255BQ8WV15 326 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 TMEM171Q8WVE6 324 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 HIST1H2ACQ93077 130 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 SGTBQ96EQ0 304 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 C7orf34Q96L11 122 aa8.96□□□□□ -0.98
VPS28-204ENST00000526054 ZNF587Q96SQ5 575 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms