RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CLTCL1P53675 1640 aa10.46□□□□□ -0.74
LIMCH1-217ENST00000512946 MEIS3P1A6NDR6 274 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 M0R3H8 397 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 CD63P08962 238 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 CSNK1A1P48729 337 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 GSK3AP49840 483 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 SNU13P55769 128 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 RAC1P63000 192 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 ESPNLQ6ZVH7 1005 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF534Q76KX8 674 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 PINX1Q96BK5 328 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 MAP6Q96JE9 813 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 CLDN34H7C241 214 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 AHRP35869 848 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 DHPSP49366 369 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 TCTAP57738 103 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 GPR17Q13304 367 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM69BQ5VUD6 431 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 LRRTM1Q86UE6 522 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 STPG2Q8N412 459 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF321PQ8N8H1 164 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 ADPRHL1Q8NDY3 354 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 DMBX1Q8NFW5 382 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 SCAMP5Q8TAC9 235 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 GHSRQ92847 366 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 NDUFB11Q9NX14 153 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 IGHG1P01857 330 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 IL5P05113 134 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 COX5AP20674 150 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 RABGGTBP53611 331 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 CDKN2DP55273 166 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 WNT7BP56706 349 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 RPS25P62851 125 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 MEF2AQ02078 507 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 CRMP1Q14194 572 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 DEFB134Q4QY38 66 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 PDZD11Q5EBL8 140 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 GDPD3Q7L5L3 318 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 SDR9C7Q8NEX9 313 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 DVL3Q92997 716 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 KCNJ15Q99712 375 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 DPH7Q9BTV6 452 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 YIPF1Q9Y548 306 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 EIF4EP06730 217 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 RPL7P18124 248 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 SRMP19623 302 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 PSMB10P40306 273 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 Q1RN00 199 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 TMEM97Q5BJF2 176 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 PLPP4Q5VZY2 271 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 TEX261Q6UWH6 196 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 Q6ZVU0 165 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 MCATQ8IVS2 390 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 GATSQ8NAP1 163 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 OR8J2Q8NGG1 315 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 PXYLP1Q8TE99 480 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 ZFPM2Q8WW38 1151 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 UCK1Q9HA47 277 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 MRPS28Q9Y2Q9 187 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 U3KQ87 197 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 ABCC6O95255 1503 aa10.45□□□□□ -0.74
LIMCH1-217ENST00000512946 DEDDO75618 318 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 P04436 131 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 OR8U8P0C7N1 319 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 IL1RNP18510 177 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 SDC1P18827 310 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 TACR1P25103 407 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 KRTDAPP60985 99 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF85Q03923 595 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 GAB1Q13480 694 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 PTPRCAPQ14761 206 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 TOMM20LQ6UXN7 152 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 GALNT16Q8N428 558 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 EMG1Q92979 244 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 LHX4Q969G2 390 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 GSX1Q9H4S2 264 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 FBXO34Q9NWN3 711 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 ADGRB3O60242 1522 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 C4orf47A7E2U8 309 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF814B7Z6K7 855 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 NRP1O14786 923 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 NQO2P16083 231 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 VIPR2P41587 438 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 NOVA1P51513 510 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 RPS26P62854 115 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 VGLL4Q14135 290 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF684Q5T5D7 378 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 LBX2Q6XYB7 198 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF551Q7Z340 670 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 EDAQ92838 391 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM3DQ96BQ1 224 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 PEBP4Q96S96 227 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 LPAR4Q99677 370 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 NDFIP1Q9BT67 221 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 DNMT3BQ9UBC3 853 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 KCNK6Q9Y257 313 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 MEGF6O75095 1541 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 BCL9LQ86UU0 1499 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM227AF5H4B4 570 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 AP4M1O00189 453 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms