RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 SEC24CP53992 1094 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 TXNL4AP83876 142 aaKnown RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 EGR4Q05215 589 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 SCGB2A2Q13296 93 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 MAD2L1BPQ15013 274 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 CHI3L2Q15782 390 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 PHYHD1Q5SRE7 291 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 C1orf229Q6ZS94 237 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF621Q6ZSS3 439 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 SERPINA11Q86U17 422 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 LRP11Q86VZ4 500 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 RIBC1Q8N443 379 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 TRIML2Q8N7C3 387 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 EIF1ADQ8N9N8 165 aaKnown RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 IL17RDQ8NFM7 739 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 OR51F2Q8NH61 342 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 KIF18AQ8NI77 898 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 STK35Q8TDR2 534 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 YIPF5Q969M3 257 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 KTI12Q96EK9 354 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 OR2M2Q96R28 347 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 C20orf27Q9GZN8 174 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF275Q9NSD4 429 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 B3GNT2Q9NY97 397 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 MYEF2Q9P2K5 600 aaKnown RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 LGALS13Q9UHV8 139 aa12.63□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF443Q9Y2A4 671 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF99A8MXY4 864 aaPredicted RBP12.62□□□□□ -0.39
TRAF4-212ENST00000498540 TRIM77I1YAP6 450 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 NCR1O76036 304 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 AVPP01185 164 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 EPHA1P21709 976 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 ACHEP22303 614 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 GTF2E2P29084 291 aaKnown RBP12.62□□□□□ -0.39
TRAF4-212ENST00000498540 IL12AP29459 219 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 EVX1P49640 407 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 ARFIP2P53365 341 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 UFM1P61960 85 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 LMO4P61968 165 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 SLC9B1Q4ZJI4 515 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 RPS26P11Q5JNZ5 115 aaPredicted RBP12.62□□□□□ -0.39
TRAF4-212ENST00000498540 RNF220Q5VTB9 566 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 FAHD2BQ6P2I3 314 aaPredicted RBP12.62□□□□□ -0.39
TRAF4-212ENST00000498540 NUDCD3Q8IVD9 361 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 LRRC34Q8IZ02 419 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 TMEM123Q8N131 208 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 RDH5Q92781 318 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 FAHD2AQ96GK7 314 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF75AQ96N20 296 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 OXGR1Q96P68 337 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 SLC6A13Q9NSD5 602 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 P2RX2Q9UBL9 471 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 FZR1Q9UM11 496 aa12.62□□□□□ -0.39
TRAF4-212ENST00000498540 LOC105371242A0A075B767 164 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 WDR91A4D1P6 747 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 M0R082 166 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 M0R3G1 203 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 TRAF3IP2O43734 574 aaPredicted RBP12.61□□□□□ -0.39
TRAF4-212ENST00000498540 TYROBPO43914 113 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 FZD7O75084 574 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 PNPP00491 289 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 BCHEP06276 602 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 ALDOCP09972 364 aaKnown RBP12.61□□□□□ -0.39
TRAF4-212ENST00000498540 MYZAPP0CAP1 466 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 CD79AP11912 226 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF35P13682 527 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 ETFAP13804 333 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF14P17017 642 aaPredicted RBP12.61□□□□□ -0.39
TRAF4-212ENST00000498540 LBPP18428 481 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 MVDP53602 400 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 ABCE1P61221 599 aaKnown RBP12.61□□□□□ -0.39
TRAF4-212ENST00000498540 HOXC5Q00444 222 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 PIGFQ07326 219 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 C1DQ13901 141 aaKnown RBP12.61□□□□□ -0.39
TRAF4-212ENST00000498540 GSG1Q2KHT4 349 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 USP43Q70EL4 1123 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 CCDC36Q8IYA8 594 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 PIK3C3Q8NEB9 887 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF417Q8TAU3 575 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 OR52E6Q96RD3 313 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 ZNF587Q96SQ5 575 aaPredicted RBP12.61□□□□□ -0.39
TRAF4-212ENST00000498540 SORT1Q99523 831 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 RBM4Q9BWF3 364 aaKnown RBP12.61□□□□□ -0.39
TRAF4-212ENST00000498540 NUF2Q9BZD4 464 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 MS4A5Q9H3V2 200 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 PRDM4Q9UKN5 801 aa12.61□□□□□ -0.39
TRAF4-212ENST00000498540 TRAV20A0A0B4J274 112 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 PPIHO43447 177 aaKnown RBP12.6□□□□□ -0.39
TRAF4-212ENST00000498540 RP2O75695 350 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 SERPINE1P05121 402 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 NAT2P11245 290 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 GLRXP35754 106 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 RPL14P50914 215 aaKnown RBP12.6□□□□□ -0.39
TRAF4-212ENST00000498540 CRISP3P54108 245 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 FXNQ16595 210 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 AWAT1Q58HT5 328 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 CARD17Q5XLA6 110 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 WDFY1Q8IWB7 410 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 SLC38A5Q8WUX1 472 aa12.6□□□□□ -0.39
TRAF4-212ENST00000498540 SPATA9Q9BWV2 254 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms