RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DEC1Q9P2X7 70 aa2.12□□□□□ -2.07
VPS50-219ENST00000495039 CDH9Q9ULB4 789 aa2.12□□□□□ -2.07
VPS50-219ENST00000495039 MTCL1Q9Y4B5 1905 aaKnown RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 IGLV4-69A0A075B6H9 119 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 PCP4L1A6NKN8 68 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 OR5B21A6NL26 309 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 ANKRD63C9JTQ0 380 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 HSD17B6O14756 317 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 RAMP3O60896 148 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 MTX2O75431 263 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 HOXA9P31269 272 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 SSR1P43307 286 aaKnown RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 CCT3P49368 545 aaKnown RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 DUSP3P51452 185 aaPredicted RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 PDIA2Q13087 525 aaKnown RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 PDK3Q15120 406 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 PSG5Q15238 335 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 CYTH1Q15438 398 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 KCTD19Q17RG1 926 aaPredicted RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 RFX4Q33E94 735 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 FILIP1LQ4L180 1135 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 LRRC23Q53EV4 343 aaPredicted RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 PIGGQ5H8A4 983 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 GALNT17Q6IS24 598 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 CAMK2N1Q7Z7J9 78 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 ZNF546Q86UE3 836 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 ZNF540Q8NDQ6 660 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 OR4F15Q8NGB8 312 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 MAGEE2Q8TD90 523 aaPredicted RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 MCOLN3Q8TDD5 553 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 COQ2Q96H96 371 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 TMEM43Q9BTV4 400 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 CAPS2Q9BXY5 557 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 PARD6BQ9BYG5 372 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 SLC17A9Q9BYT1 436 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 VCXQ9H320 206 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 SRMSQ9H3Y6 488 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 RANBP3Q9H6Z4 567 aaPredicted RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 ZFP14Q9HCL3 533 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 GIN1Q9NXP7 522 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 CLCF1Q9UBD9 225 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 MMP17Q9ULZ9 603 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 TRAPPC4Q9Y296 219 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 HEBP2Q9Y5Z4 205 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 PHF3Q92576 2039 aaKnown RBP2.11□□□□□ -2.07
VPS50-219ENST00000495039 MAP3K15Q6ZN16 1313 aa2.11□□□□□ -2.07
VPS50-219ENST00000495039 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.1□□□□□ -2.07
VPS50-219ENST00000495039 IGKV2D-24A0A075B6R9 120 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 C12orf77C9JDV5 145 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 GOLGA8SH3BPF8 625 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 SLC31A2O15432 143 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 ZNF208O43345 1280 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 RIPK2O43353 540 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 TOM1O60784 492 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 PLEKP08567 350 aaPredicted RBP2.1□□□□□ -2.07
VPS50-219ENST00000495039 NCK1P16333 377 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 PRPHP41219 470 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 ERVK-25P63136 954 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 PAX5Q02548 391 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 KIAA0087Q14695 138 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 PDZK1Q5T2W1 519 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 ZNF691Q5VV52 312 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 PMF1Q6P1K2 205 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 C1orf94Q6P1W5 598 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 NUDCD3Q8IVD9 361 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 OR1N2Q8NGR9 330 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 DTX3LQ8TDB6 740 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 PYROXD1Q8WU10 500 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 SCFD1Q8WVM8 642 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 UBE2Q2Q8WVN8 375 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 COPS8Q99627 209 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 NPAS2Q99743 824 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 RIOK1Q9BRS2 568 aaKnown RBP2.1□□□□□ -2.07
VPS50-219ENST00000495039 PLA2G2FQ9BZM2 168 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 DEFB127Q9H1M4 99 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 VCX2Q9H322 139 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 GORASP2Q9H8Y8 452 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 ZNF226Q9NYT6 803 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 GNPTGQ9UJJ9 305 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 KCNIP3Q9Y2W7 256 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 N6AMT1Q9Y5N5 214 aa2.1□□□□□ -2.07
VPS50-219ENST00000495039 SCN2AQ99250 2005 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 A0A096LNJ9 63 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 GPR89AB7ZAQ6 455 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 CLDN9O95484 217 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 ALDOBP05062 364 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 GPR89BP0CG08 455 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 SLC2A5P22732 501 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 GLRA2P23416 452 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 LONP1P36776 959 aaKnown RBP2.09□□□□□ -2.07
VPS50-219ENST00000495039 OPRD1P41143 372 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 MAGEA8P43361 318 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 CRISP3P54108 245 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 ATP1B3P54709 279 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 CDK16Q00536 496 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 SMARCB1Q12824 385 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 ANKDD1AQ495B1 522 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 LCN12Q6JVE5 192 aa2.09□□□□□ -2.07
VPS50-219ENST00000495039 THOC6Q86W42 341 aaKnown RBP2.09□□□□□ -2.07
VPS50-219ENST00000495039 TRIM69Q86WT6 500 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms