RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 CDH12P55289 794 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 SH3BGRP55822 239 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-213ENST00000489045 TUBA1BP68363 451 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 TUBA4AP68366 448 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 PPP2R2BQ00005 443 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 ANKRD16Q6P6B7 361 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 TUBA1AQ71U36 451 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 OR6S1Q8NH40 331 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 SLC38A2Q96QD8 506 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 ARHGDIGQ99819 225 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 KAT8Q9H7Z6 458 aaKnown RBP20.07■□□□□ 0.8
COL9A3-213ENST00000489045 ARFGEF3Q5TH69 2177 aa20.07■□□□□ 0.8
COL9A3-213ENST00000489045 ARPC4-TTLL3A0A0A6YYG9 625 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 RPL36A-HNRNPH2H7BZ11 118 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 M0QX08 132 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 BGLAPP02818 100 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 NQO1P15559 274 aaKnown RBP20.06■□□□□ 0.8
COL9A3-213ENST00000489045 MFSD13AQ14CX5 517 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 DUSP7Q16829 419 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 METTL21CQ5VZV1 264 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 GPR137CQ8N3F9 429 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 GPR32P1Q8NGA4 272 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 MAGEE2Q8TD90 523 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-213ENST00000489045 HTRA1Q92743 480 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 SLC41A3Q96GZ6 507 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 ZNF317Q96PQ6 595 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-213ENST00000489045 OR2M2Q96R28 347 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 MCHR1Q99705 422 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 TMEM120AQ9BXJ8 343 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 GPR35Q9HC97 309 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 CORINQ9Y5Q5 1042 aa20.06■□□□□ 0.8
COL9A3-213ENST00000489045 SONP18583 2426 aaKnown RBP20.05■□□□□ 0.8
COL9A3-213ENST00000489045 ABCA1O95477 2261 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 LOC102725191A0A1B0GVB3 256 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 MS4A18H0YCH9 400 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 AKAP8O43823 692 aaKnown RBP20.05■□□□□ 0.8
COL9A3-213ENST00000489045 HPRP00739 348 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 APOBEC3AP31941 199 aaPredicted RBP20.05■□□□□ 0.8
COL9A3-213ENST00000489045 ARF1P84077 181 aaKnown RBP20.05■□□□□ 0.8
COL9A3-213ENST00000489045 RAB35Q15286 201 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 NPTX1Q15818 432 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 MS4A18Q3C1V0 323 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 SWT1Q5T5J6 900 aaKnown RBP20.05■□□□□ 0.8
COL9A3-213ENST00000489045 UEVLDQ8IX04 471 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 TMEM123Q8N131 208 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 ANKK1Q8NFD2 765 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 MOGAT1Q96PD6 335 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 TMEM43Q9BTV4 400 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 ASPNQ9BXN1 380 aa20.05■□□□□ 0.8
COL9A3-213ENST00000489045 LRRN3E7EW58 273 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 H7C417 338 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 FBP2O00757 339 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 FMO6PO60774 539 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 C8BP07358 591 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 HLA-DOBP13765 273 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 PAX7P23759 505 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 PCGF2P35227 344 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 CEACAM16Q2WEN9 425 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 ZNF613Q6PF04 617 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 PATL1Q86TB9 770 aaKnown RBP20.04■□□□□ 0.8
COL9A3-213ENST00000489045 SLC30A8Q8IWU4 369 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 C10orf53Q8N6V4 93 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 SCAIQ8N9R8 606 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 PIK3C3Q8NEB9 887 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 OR6T1Q8NGN1 323 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 OR10A6Q8NH74 314 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 KCNS3Q9BQ31 491 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 RHNO1Q9BSD3 238 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 KATNB1Q9BVA0 655 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 CRLF2Q9HC73 371 aa20.04■□□□□ 0.8
COL9A3-213ENST00000489045 CRNNQ9UBG3 495 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-213ENST00000489045 IGHV4-30-2A0A087WSY4 118 aa20.03■□□□□ 0.8
COL9A3-213ENST00000489045 CPSF4LA6NMK7 179 aaKnown RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 HOXB1P14653 301 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 POU3F1Q03052 451 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 CHRNB3Q05901 458 aa20.03■□□□□ 0.8
COL9A3-213ENST00000489045 PMS2P3Q13401 168 aa20.03■□□□□ 0.8
COL9A3-213ENST00000489045 TRMT5Q32P41 509 aaKnown RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 VANGL1Q8TAA9 524 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 TAMM41Q96BW9 452 aa20.03■□□□□ 0.8
COL9A3-213ENST00000489045 ZNF837Q96EG3 531 aaPredicted RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 EMC6Q9BV81 110 aa20.03■□□□□ 0.8
COL9A3-213ENST00000489045 SEC61A2Q9H9S3 476 aa20.03■□□□□ 0.8
COL9A3-213ENST00000489045 MRPL39Q9NYK5 338 aaKnown RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 CHD3Q12873 2000 aaKnown RBP20.03■□□□□ 0.8
COL9A3-213ENST00000489045 M0R3G1 203 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 CHP2O43745 196 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 CRYAAP02489 173 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 CECR9P0C854 216 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 CD247P20963 164 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 NAAAQ02083 359 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 PUDPQ08623 228 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 C3orf36Q3SXR2 165 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 ENTPD8Q5MY95 495 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 PHYHD1Q5SRE7 291 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 CARD17Q5XLA6 110 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 CLEC2AQ6UVW9 174 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 LINC00114Q6XXX2 140 aa20.02■□□□□ 0.8
COL9A3-213ENST00000489045 RBM45Q8IUH3 476 aaKnown RBP20.02■□□□□ 0.8
COL9A3-213ENST00000489045 OR4D11Q8NGI4 311 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms