RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LIMS3P0CW19 117 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 LIMS4P0CW20 117 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 CPEP16870 476 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 MYL12AP19105 171 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 SLC1A3P43003 542 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 KIR2DL3P43628 341 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 CDH11P55287 796 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 WNT4P56705 351 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 NRG3P56975 720 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 FOXK2Q01167 660 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 EGR4Q05215 589 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 IL10RAQ13651 578 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 EFR3AQ14156 821 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 ELOA3BQ3SY89 546 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 Q5BKY6 102 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 SLC35F1Q5T1Q4 408 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 PPP1R32Q7Z5V6 425 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 CPOQ8IVL8 374 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 ESX1Q8N693 406 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 ELOA3Q8NG57 546 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 OR5W2Q8NH69 310 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 SVIPQ8NHG7 77 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 TBX5Q99593 518 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 MED20Q9H944 212 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 C12orf10Q9HB07 376 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 ZNF160Q9HCG1 818 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 B3GAT2Q9NPZ5 323 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 CMC2Q9NRP2 79 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 PAQR5Q9NXK6 330 aaPredicted RBP11.03□□□□□ -0.64
HDAC6-230ENST00000488543 SF3B6Q9Y3B4 125 aaKnown RBP11.03□□□□□ -0.64
HDAC6-230ENST00000488543 PTPRBP23467 1997 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 B4DXG7 233 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 PLA2G10O15496 165 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 GMFGO60234 142 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 RAD1O60671 282 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 IGF2P01344 180 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 TACR3P29371 465 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 MTNR1AP48039 350 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 RPS15P62841 145 aaKnown RBP11.02□□□□□ -0.64
HDAC6-230ENST00000488543 CXXC5Q7LFL8 322 aaKnown RBP11.02□□□□□ -0.64
HDAC6-230ENST00000488543 SLC43A2Q8N370 569 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 SMAP2Q8WU79 429 aaPredicted RBP11.02□□□□□ -0.64
HDAC6-230ENST00000488543 HCAR1Q9BXC0 346 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 FN3KQ9H479 309 aa11.02□□□□□ -0.64
HDAC6-230ENST00000488543 PCSK5Q92824 1860 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 STMND1H3BQB6 276 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 SMLR1H3BR10 107 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 SLC30A4O14863 429 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 OR2J2O76002 312 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 ZFAND5O76080 213 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 HTR1FP30939 366 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 SLC6A6P31641 620 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 SLC9A3P48764 834 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 RAB25P57735 213 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 RPS4XP62701 263 aaKnown RBP11.02□□□□□ -0.65
HDAC6-230ENST00000488543 LTBQ06643 244 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 RAB40BQ12829 278 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 KRR1Q13601 381 aaKnown RBP11.02□□□□□ -0.65
HDAC6-230ENST00000488543 TMEM44Q2T9K0 475 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.02□□□□□ -0.65
HDAC6-230ENST00000488543 KLHL22Q53GT1 634 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 NIPAL3Q6P499 406 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 PLBD1Q6P4A8 553 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 RTL4Q6ZR62 310 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 VASH1Q7L8A9 365 aaPredicted RBP11.02□□□□□ -0.65
HDAC6-230ENST00000488543 OR5L2Q8NGL0 311 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF563Q8TA94 476 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 ELP5Q8TE02 316 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 ADAMTS14Q8WXS8 1223 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 NKD1Q969G9 470 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 KCTD7Q96MP8 289 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF700Q9H0M5 742 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 BAIAP2Q9UQB8 552 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 DMXL2Q8TDJ6 3036 aa11.02□□□□□ -0.65
HDAC6-230ENST00000488543 IQCMA0A1B0GVH7 501 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 SNTNA6NMZ2 147 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 TERTO14746 1132 aaKnown RBP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 CASKO14936 926 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 RAB40ALP0C0E4 278 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 NAGAP17050 411 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 CELP19835 753 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 P2RX1P51575 399 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 ZNF74Q16587 644 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 GXYLT1Q4G148 440 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 CNIH2Q6PI25 160 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 IL20RBQ6UXL0 311 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 IL22RA1Q8N6P7 574 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 GPR119Q8TDV5 335 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 LIPHQ8WWY8 451 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 RFKQ969G6 155 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 NACC2Q96BF6 587 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 TMEM246Q9BRR3 403 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 MYOTQ9UBF9 498 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 CHRNA9Q9UGM1 479 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 EXOGQ9Y2C4 368 aaKnown RBP11.01□□□□□ -0.65
HDAC6-230ENST00000488543 HRH3Q9Y5N1 445 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 NSG1A0A0A6YYJ2 146 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 IRGMA1A4Y4 181 aa11.01□□□□□ -0.65
HDAC6-230ENST00000488543 C2orf72A6NCS6 295 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms