RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ABCA1O95477 2261 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 PRORSD1PA6NEY8 169 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF587BE7ETH6 402 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 FXYD1O00168 92 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 CD247P20963 164 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 ROR2Q01974 943 aaKnown RBP12.29□□□□□ -0.44
UPF3A-204ENST00000475218 MUC15Q8N387 334 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 OR6T1Q8NGN1 323 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 TSPEARQ8WU66 669 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 SLC47A1Q96FL8 570 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 OR2M2Q96R28 347 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 ALG2Q9H553 416 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 FAIMQ9NVQ4 179 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 CRNNQ9UBG3 495 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-204ENST00000475218 POU2F3Q9UKI9 436 aa12.29□□□□□ -0.44
UPF3A-204ENST00000475218 IGHV4-30-2A0A087WSY4 118 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 A0A096LPE4 126 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ARPC4-TTLL3A0A0A6YYG9 625 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 A0A0G2JND7 137 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 A0A1W2PPZ6 126 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 M0QX08 132 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 AIM2O14862 343 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 OR2T1O43869 369 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 IGLV1-44P01699 117 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF43P17038 809 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 FABP6P51161 128 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 C1QTNF12Q5T7M4 302 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF544Q6NX49 715 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 C5orf46Q6UWT4 87 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 H1FNTQ75WM6 255 aaPredicted RBP12.28□□□□□ -0.44
UPF3A-204ENST00000475218 C11orf65Q8NCR3 313 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ADPRHL1Q8NDY3 354 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 OR10H5Q8NGA6 315 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 OR6S1Q8NH40 331 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 MAGEE2Q8TD90 523 aaPredicted RBP12.28□□□□□ -0.44
UPF3A-204ENST00000475218 TAMM41Q96BW9 452 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ZNF607Q96SK3 696 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 GPR35Q9HC97 309 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ATP23Q9Y6H3 246 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 YLPM1P49750 1951 aaKnown RBP12.28□□□□□ -0.44
UPF3A-204ENST00000475218 H7C417 338 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 SSX4O60224 188 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 SERPINB7O75635 380 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ARF1P84077 181 aaKnown RBP12.28□□□□□ -0.44
UPF3A-204ENST00000475218 RBBP4Q09028 425 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 NFYCQ13952 458 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 CYP51A1Q16850 503 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ABHD12BQ7Z5M8 362 aaPredicted RBP12.28□□□□□ -0.44
UPF3A-204ENST00000475218 TXNDC15Q96J42 360 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 HS6ST2Q96MM7 605 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 TMEM120AQ9BXJ8 343 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 FAM107BQ9H098 131 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 OBP2BQ9NPH6 170 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 TRIM33Q9UPN9 1127 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 USP22Q9UPT9 525 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 ANGPT4Q9Y264 503 aa12.28□□□□□ -0.44
UPF3A-204ENST00000475218 OR6C65A6NJZ3 312 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 ANGPT2O15123 496 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 KRT33AO76009 404 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 WNT11O96014 354 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 CELA3BP08861 270 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 CECR9P0C854 216 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 CALCRP30988 508 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 PCGF2P35227 344 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 SWI5Q1ZZU3 235 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 METTL21CQ5VZV1 264 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 ANKRD16Q6P6B7 361 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 FBXL14Q8N1E6 418 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 OR10A6Q8NH74 314 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 SLC38A2Q96QD8 506 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 MCHR1Q99705 422 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 TMEM43Q9BTV4 400 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 EMC6Q9BV81 110 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 TMEM27Q9HBJ8 222 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 CUBNO60494 3623 aa12.27□□□□□ -0.45
UPF3A-204ENST00000475218 KIAA1324LA8MWY0 1029 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-204ENST00000475218 FMO6PO60774 539 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 SEC14L2O76054 403 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 LY6HO94772 140 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 IGKV3-15P01624 115 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 GTF2E2P29084 291 aaKnown RBP12.26□□□□□ -0.45
UPF3A-204ENST00000475218 SF3A3Q12874 501 aaKnown RBP eCLIP12.26□□□□□ -0.454e-6■■■■□ 22.2
UPF3A-204ENST00000475218 CEACAM16Q2WEN9 425 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 RABL3Q5HYI8 236 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 SWT1Q5T5J6 900 aaKnown RBP12.26□□□□□ -0.45
UPF3A-204ENST00000475218 NANOGP8Q6NSW7 305 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 KLHL24Q6TFL4 600 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 CALHM3Q86XJ0 350 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 ANKK1Q8NFD2 765 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 BHLHE22Q8NFJ8 381 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-204ENST00000475218 NANOS1Q8WY41 292 aaKnown RBP12.26□□□□□ -0.45
UPF3A-204ENST00000475218 SIKE1Q9BRV8 207 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 NANOGQ9H9S0 305 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 FKRPQ9H9S5 495 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 BARX1Q9HBU1 254 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-204ENST00000475218 CRLF2Q9HC73 371 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 MED29Q9NX70 200 aa12.26□□□□□ -0.45
UPF3A-204ENST00000475218 MRPL39Q9NYK5 338 aaKnown RBP12.26□□□□□ -0.45
UPF3A-204ENST00000475218 PLPP3O14495 311 aa12.25□□□□□ -0.45
UPF3A-204ENST00000475218 GPRIN2O60269 458 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms