RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PTBP1P26599 531 aaKnown RBP eCLIP17.35■□□□□ 0.37
VIM-203ENST00000469543 TRAM1Q15629 374 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 MESTQ5EB52 335 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 DPY19L4Q7Z388 723 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 SYS1Q8N2H4 156 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 LRRC75AQ8NAA5 344 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 OR51A4Q8NGJ6 313 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 OR8K3Q8NH51 312 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 ADIPOR1Q96A54 375 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 KCTD12Q96CX2 325 aaKnown RBP17.35■□□□□ 0.37
VIM-203ENST00000469543 TTYH1Q9H313 450 aaPredicted RBP17.35■□□□□ 0.37
VIM-203ENST00000469543 RXFP3Q9NSD7 469 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 RAD1O60671 282 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 GLCEO94923 617 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 IL33O95760 270 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 ASAH2BP0C7U1 165 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 PPICP45877 212 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 PSMD4P55036 377 aaKnown RBP17.35■□□□□ 0.37
VIM-203ENST00000469543 PRPS1P60891 318 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 LIPNQ5VXI9 398 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 FAM205BPQ63HN1 556 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 LANCL3Q6ZV70 420 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 JAZF1Q86VZ6 243 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 C9orf40Q8IXQ3 194 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 CMTM4Q8IZR5 234 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 ZNF687Q8N1G0 1237 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 ADAD1Q96M93 576 aaKnown RBP17.35■□□□□ 0.37
VIM-203ENST00000469543 TSPAN32Q96QS1 320 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 AMELYQ99218 206 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 NPFFR2Q9Y5X5 522 aa17.35■□□□□ 0.37
VIM-203ENST00000469543 FAM172BPA6NC97 362 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 CD14P08571 375 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 RRAS2P62070 204 aaPredicted RBP17.34■□□□□ 0.37
VIM-203ENST00000469543 LGALS3BPQ08380 585 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 CHRDL2Q6WN34 429 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 LRRC69Q6ZNQ3 347 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 KDM8Q8N371 416 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 LCORQ96JN0 433 aaPredicted RBP17.34■□□□□ 0.37
VIM-203ENST00000469543 FRRS1LQ9P0K9 344 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 GRHPRQ9UBQ7 328 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 MRM2Q9UI43 246 aaKnown RBP17.34■□□□□ 0.37
VIM-203ENST00000469543 HIF3AQ9Y2N7 669 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 SLC6A5Q9Y345 797 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 H0YIG0 161 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 IGKV3-11P04433 115 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 YES1P07947 543 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 TRAPPC2P0DI81 140 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 TRAPPC2BP0DI82 140 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 FAPQ12884 760 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 PM20D2Q8IYS1 436 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 TOMM5Q8N4H5 51 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 THAP3Q8WTV1 239 aaPredicted RBP17.34■□□□□ 0.37
VIM-203ENST00000469543 PIGKQ92643 395 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 ATOH1Q92858 354 aaPredicted RBP17.34■□□□□ 0.37
VIM-203ENST00000469543 PPP1R14AQ96A00 147 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 NPAS1Q99742 590 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 TRAV1-2A0A0B4J238 106 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 ARHGEF9O43307 516 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 AKR7A3O95154 331 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 RORAP35398 523 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 SERTAD2Q14140 314 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 FCN2Q15485 313 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 TCTE1Q5JU00 501 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 PYHIN1Q6K0P9 492 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 FCRLAQ7L513 359 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.34■□□□□ 0.37
VIM-203ENST00000469543 MKL2Q9ULH7 1088 aa17.34■□□□□ 0.37
VIM-203ENST00000469543 LILRA5A6NI73 299 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 LMO7DNF2Z398 122 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 MBTPS2O43462 519 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 ZNF217O75362 1048 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 ARL6IP5O75915 188 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 GUSBP08236 651 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 SRFP11831 508 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 PLA2G7Q13093 441 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 TMEM255AQ5JRV8 349 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 ZNF684Q5T5D7 378 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 TEX19Q8NA77 164 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 ZNF527Q8NB42 609 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 NKIRAS2Q9NYR9 191 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 ZNF879B4DU55 563 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 SCO2O43819 266 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 SERPINA3P01011 423 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 GLULP15104 373 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 CXCL3P19876 107 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 SDHAP31040 664 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 ARL4DP49703 201 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 ETFDHQ16134 617 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 C14orf28Q4W4Y0 310 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 SFRP4Q6FHJ7 346 aaPredicted RBP17.33■□□□□ 0.36
VIM-203ENST00000469543 SLC35D2Q76EJ3 337 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 SLITRK4Q8IW52 837 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 OR6N2Q8NGY6 317 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 THEM6Q8WUY1 208 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 MAP6Q96JE9 813 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 LIN7BQ9HAP6 207 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 KLK11Q9UBX7 282 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 IKZF2Q9UKS7 526 aa17.33■□□□□ 0.36
VIM-203ENST00000469543 FITM1A5D6W6 292 aa17.32■□□□□ 0.36
VIM-203ENST00000469543 H0YC42 278 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms