RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 C1orf146Q5VVC0 180 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 CASP12Q6UXS9 341 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 AAED1Q7RTV5 226 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.58□□□□□ -0.72
VPS13D-204ENST00000469054 NANOGNBQ7Z5D8 188 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 DMRTC2Q8IXT2 367 aaPredicted RBP10.58□□□□□ -0.72
VPS13D-204ENST00000469054 UTP4Q969X6 686 aaKnown RBP10.58□□□□□ -0.72
VPS13D-204ENST00000469054 ALPK1Q96QP1 1244 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 SPOCK3Q9BQ16 436 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 CCM2LQ9NUG4 571 aaPredicted RBP10.58□□□□□ -0.72
VPS13D-204ENST00000469054 TAS2R5Q9NYW4 299 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 TMEM5Q9Y2B1 443 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 FLNCQ14315 2725 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 LRRK2Q5S007 2527 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 GCN1Q92616 2671 aaKnown RBP10.58□□□□□ -0.72
VPS13D-204ENST00000469054 DOPEY2Q9Y3R5 2298 aa10.58□□□□□ -0.72
VPS13D-204ENST00000469054 SH3PXD2BA1X283 911 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 EFCAB9A8MZ26 197 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 C11orf98E9PRG8 122 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 TNFRSF11BO00300 401 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 RNF13O43567 381 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 TRAF3IP2O43734 574 aaPredicted RBP10.57□□□□□ -0.72
VPS13D-204ENST00000469054 CIB2O75838 187 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 TSPAN19P0C672 248 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 SAGP10523 405 aaPredicted RBP10.57□□□□□ -0.72
VPS13D-204ENST00000469054 MAKP20794 623 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 GPR4P46093 362 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 OMPP47874 163 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 CLDN17P56750 224 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 SORDQ00796 357 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 POU3F1Q03052 451 aaPredicted RBP10.57□□□□□ -0.72
VPS13D-204ENST00000469054 SNTB1Q13884 538 aaKnown RBP10.57□□□□□ -0.72
VPS13D-204ENST00000469054 FBXW9Q5XUX1 488 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 OR2T5Q6IEZ7 315 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 NIPAL3Q6P499 406 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 NHLRC1Q6VVB1 395 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 Q6ZT83 130 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 TMPRSS11FQ6ZWK6 438 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 YTHDF3Q7Z739 585 aaKnown RBP10.57□□□□□ -0.72
VPS13D-204ENST00000469054 MEX3DQ86XN8 651 aaKnown RBP10.57□□□□□ -0.72
VPS13D-204ENST00000469054 GABRG1Q8N1C3 465 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 ANKK1Q8NFD2 765 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 OR4K5Q8NGD3 323 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 OR2T29Q8NH02 315 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 KRCC1Q9NPI7 259 aaPredicted RBP10.57□□□□□ -0.72
VPS13D-204ENST00000469054 TMCC3Q9ULS5 477 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 RCE1Q9Y256 329 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 GPR52Q9Y2T5 361 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 NOX1Q9Y5S8 564 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 LYVE1Q9Y5Y7 322 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 ICE1Q9Y2F5 2266 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 TENM4Q6N022 2769 aa10.57□□□□□ -0.72
VPS13D-204ENST00000469054 INTS1Q8N201 2190 aaKnown RBP10.56□□□□□ -0.72
VPS13D-204ENST00000469054 C16orf97H3BN30 126 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 OR10H3O60404 316 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 FKBP6O75344 327 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 SERPINI2O75830 405 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 ZNF432O94892 652 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 ADAP00813 363 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 IGHV3-9P01782 118 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 UGT2B10P36537 528 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 IFNGR2P38484 337 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 AQP2P41181 271 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 LIMS1P48059 325 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 SLC9A3P48764 834 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 SELENOPP49908 381 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 GABPB1Q06547 395 aaPredicted RBP10.56□□□□□ -0.72
VPS13D-204ENST00000469054 RPL18Q07020 188 aaKnown RBP10.56□□□□□ -0.72
VPS13D-204ENST00000469054 LAPTM4AQ15012 233 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 P2RY6Q15077 328 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 ANKDD1AQ495B1 522 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 TSPO2Q5TGU0 170 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 HIST2H2BCQ6DN03 193 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 STAC2Q6ZMT1 411 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 MEX3BQ6ZN04 569 aaKnown RBP10.56□□□□□ -0.72
VPS13D-204ENST00000469054 ZER1Q7Z7L7 766 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 OAFQ86UD1 273 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 UBE2J2Q8N2K1 259 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 PAPD5Q8NDF8 572 aaKnown RBP10.56□□□□□ -0.72
VPS13D-204ENST00000469054 OR51A7Q8NH64 312 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 MOSPD2Q8NHP6 518 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 SLCO4A1Q96BD0 722 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 FAM46AQ96IP4 442 aaKnown RBP10.56□□□□□ -0.72
VPS13D-204ENST00000469054 RSRC1Q96IZ7 334 aaKnown RBP10.56□□□□□ -0.72
VPS13D-204ENST00000469054 TNFRSF13CQ96RJ3 184 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 HDHD5Q9BXW7 423 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 SLCO5A1Q9H2Y9 848 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 YY1AP1Q9H869 796 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 ASB6Q9NWX5 421 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 MED29Q9NX70 200 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 UPB1Q9UBR1 384 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 HIF3AQ9Y2N7 669 aa10.56□□□□□ -0.72
VPS13D-204ENST00000469054 SPTAN1Q13813 2472 aaKnown RBP10.55□□□□□ -0.72
VPS13D-204ENST00000469054 TRAV27A0A087WT01 109 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 SLC35F4A4IF30 521 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 TUBAL3A6NHL2 446 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 OR6C65A6NJZ3 312 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 ZNF726A6NNF4 738 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 CDC42EP2O14613 210 aa10.55□□□□□ -0.72
VPS13D-204ENST00000469054 AKAP8O43823 692 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms