RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SFT2D3Q587I9 215 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 AGBL4Q5VU57 503 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PAQR9Q6ZVX9 377 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 GPRIN1Q7Z2K8 1008 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 LRRC56Q8IYG6 542 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC44A3Q8N4M1 653 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 HORMAD2Q8N7B1 307 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RNF148Q8N7C7 305 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 NECAP1Q8NC96 275 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM71CQ8NEG0 241 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TSPAN14Q8NG11 270 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 OR6K3Q8NGY3 331 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MBD3L2Q8NHZ7 208 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PIGXQ8TBF5 258 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 APH1BQ8WW43 257 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 BIRC7Q96CA5 298 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ELMOD3Q96FG2 381 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 OR52B2Q96RD2 323 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 INPP5KQ9BT40 448 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 OSBPL11Q9BXB4 747 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ARV1Q9H2C2 271 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 FZD8Q9H461 694 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 NSUN3Q9H649 340 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 NIPAL2Q9H841 368 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 NANOGQ9H9S0 305 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TPT1P8Q9HAU6 139 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RAB18Q9NP72 206 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 AKIP1Q9NQ31 210 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ALKBH4Q9NXW9 302 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 IL17BQ9UHF5 180 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PHF11Q9UIL8 331 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RNF150Q9ULK6 438 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF490Q9ULM2 529 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ING4Q9UNL4 249 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 HS3ST3A1Q9Y663 406 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 KMT2EQ8IZD2 1858 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 REV3LO60673 3130 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 SCN5AQ14524 2016 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PTPRSQ13332 1948 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TANC1Q9C0D5 1861 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 SIP14410 1827 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 A0A1W2PQF6 199 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PRSS37A4D1T9 235 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 A8MWP6 167 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 BTN3A3O00478 584 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 NRP1O14786 923 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 LAMTOR5O43504 91 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 GGCTO75223 188 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CSO75390 466 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TSPAN13O95857 204 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 C1QCP02747 245 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CXCL10P02778 98 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MT-ND1P03886 318 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 C8GP07360 202 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RNASE1P07998 156 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ETFAP13804 333 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 S1PR1P21453 382 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 GNRHRP30968 328 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CALCRP30988 508 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PNPLA4P41247 253 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CDH11P55287 796 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CDC42P60953 191 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RANP62826 216 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 GPR17Q13304 367 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 EXOC3L2Q2M3D2 409 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ANKRD55Q3KP44 614 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 PARP15Q460N3 678 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RBM48Q5RL73 367 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 DHRS7BQ6IAN0 325 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TEX261Q6UWH6 196 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 Q6ZPB1 254 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM220AQ7Z4H9 259 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TMED4Q7Z7H5 227 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ADGRE4PQ86SQ3 457 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 UNC93AQ86WB7 457 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MMGT1Q8N4V1 131 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TEX26Q8N6G2 289 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ST6GALNAC3Q8NDV1 305 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 OCC1Q8TAD7 63 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MAPK15Q8TD08 544 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CYGBQ8WWM9 190 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TFAP2CQ92754 450 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 KCNJ9Q92806 393 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 TM4SF19Q96DZ7 209 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 WBP1Q96G27 269 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MAGEB18Q96M61 343 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 NOL4LQ96MY1 436 aaPredicted RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 SORCS2Q96PQ0 1159 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 IL12RB2Q99665 862 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 RSG1Q9BU20 258 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 OR10A2Q9H208 303 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 POPDC2Q9HBU9 364 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 EML4Q9HC35 981 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 SPAG4Q9NPE6 437 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 IL23AQ9NPF7 189 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 THSD1Q9NS62 852 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CUTCQ9NTM9 273 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MBNL3Q9NUK0 354 aaKnown RBP4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 MED9Q9NWA0 146 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 BEX4Q9NWD9 120 aaPredicted RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms