RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TEKT2Q9UIF3 430 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 RABL2BQ9UNT1 228 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 FER1L5A0AVI2 2057 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ASXL3Q9C0F0 2248 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 F13BP05160 661 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ATXN8OSP0DMR3 200 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 PGCP20142 388 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 CXCR1P25024 350 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 PSMB10P40306 273 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 MMP15P51511 669 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 BTG1P62324 171 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 GPR176Q14439 515 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ARHGAP40Q5TG30 622 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 TIGD3Q6B0B8 471 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 LYPD4Q6UWN0 246 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ZNF511Q8NB15 262 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 OR5H6Q8NGV6 325 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 CAPSLQ8WWF8 208 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ZNF501Q96CX3 271 aaPredicted RBP13.69□□□□□ -0.22
LDLR-202ENST00000455727 DPYSL5Q9BPU6 564 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 KLHDC3Q9BQ90 382 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ALG5Q9Y673 324 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 ADAMTS20P59510 1910 aa13.69□□□□□ -0.22
LDLR-202ENST00000455727 TRAV36DV7A0A075B6V5 113 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 A0A1W2PPK0 400 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 FAM172BPA6NC97 362 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 PDCD5O14737 125 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 LANCL1O43813 399 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 BGLAPP02818 100 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 GIMD1P0DJR0 217 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 BCKDHBP21953 392 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 PLCXD2Q0VAA5 305 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 GLCCI1Q86VQ1 547 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 CDC20BQ86Y33 519 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 TCTE3Q8IZS6 198 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 OMA1Q96E52 524 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 TSPAN32Q96QS1 320 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 NRSN2Q9GZP1 204 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 VN1R1Q9GZP7 353 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 SERPINI2O75830 405 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 RENP00797 406 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 MT-ATP6P00846 226 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 ABCD3P28288 659 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 NANOS3P60323 173 aaKnown RBP13.68□□□□□ -0.22
LDLR-202ENST00000455727 SF3B4Q15427 424 aaKnown RBP eCLIP13.68□□□□□ -0.222e-7■■■□□ 18.3
LDLR-202ENST00000455727 NDUFA5Q16718 116 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 PLA1AQ53H76 456 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 MESTQ5EB52 335 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 BICRALQ6AI39 1079 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 MARCH3Q86UD3 253 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 Q8N9G6 341 aaPredicted RBP13.68□□□□□ -0.22
LDLR-202ENST00000455727 ADAMTS14Q8WXS8 1223 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 ADAD1Q96M93 576 aaKnown RBP13.68□□□□□ -0.22
LDLR-202ENST00000455727 TSSK2Q96PF2 358 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 TBL1XR1Q9BZK7 514 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 DUSP15Q9H1R2 295 aaPredicted RBP13.68□□□□□ -0.22
LDLR-202ENST00000455727 ZNF768Q9H5H4 540 aaKnown RBP13.68□□□□□ -0.22
LDLR-202ENST00000455727 RANGRFQ9HD47 186 aaPredicted RBP13.68□□□□□ -0.22
LDLR-202ENST00000455727 NOX4Q9NPH5 578 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 BRD7Q9NPI1 651 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 FGF21Q9NSA1 209 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 MKL2Q9ULH7 1088 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 CAMK2AQ9UQM7 478 aa13.68□□□□□ -0.22
LDLR-202ENST00000455727 A0A1B0GVT2 93 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 CDC14CA4D256 554 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 C4orf47A7E2U8 309 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 A8MV72 311 aaPredicted RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 FAM171A2A8MVW0 826 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 PRR32B1ATL7 298 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 PIN1P1O15428 100 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 UPK3AO75631 287 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 ZFPL1O95159 310 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 ITPKBP27987 946 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 CBFBQ13951 182 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 WDR45BQ5MNZ6 344 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 EEF1A1P5Q5VTE0 462 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 FAM220AQ7Z4H9 259 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 RNF170Q96K19 258 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 TGIF2Q9GZN2 237 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 ABCG5Q9H222 651 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 SRA1Q9HD15 236 aaKnown RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 AK6Q9Y3D8 172 aaKnown RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 TMEM72A0PK05 275 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 INMT-MINDY4F8WBC2 141 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 CTDSPLO15194 276 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 TOX3O15405 576 aaPredicted RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 EEF1E1O43324 174 aaKnown RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 FADS1O60427 444 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 GP1BBP13224 206 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 SNRPBP14678 240 aaKnown RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 TOMM34Q15785 309 aaPredicted RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 SLC36A2Q495M3 483 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 SYT9Q86SS6 491 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 NOXA1Q86UR1 476 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 LIX1LQ8IVB5 337 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 OR6V1Q8N148 313 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 CLDN23Q96B33 292 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 MAP6Q96JE9 813 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 DERL3Q96Q80 235 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 MRI1Q9BV20 369 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms