RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ASB6Q9NWX5 421 aa17.6■□□□□ 0.41
COL9A3-202ENST00000452372 ZNF226Q9NYT6 803 aa17.6■□□□□ 0.41
COL9A3-202ENST00000452372 NDUFAF4Q9P032 175 aa17.6■□□□□ 0.41
COL9A3-202ENST00000452372 RHCGQ9UBD6 479 aa17.6■□□□□ 0.41
COL9A3-202ENST00000452372 MALT1Q9UDY8 824 aa17.6■□□□□ 0.41
COL9A3-202ENST00000452372 ZNF229Q9UJW7 825 aa17.6■□□□□ 0.41
COL9A3-202ENST00000452372 MED31Q9Y3C7 131 aa17.6■□□□□ 0.41
COL9A3-202ENST00000452372 HTR3EA5X5Y0 456 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 GOSR1O95249 250 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 HPRP00739 348 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 COX5AP20674 150 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 FUT4P22083 530 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 IGHV1-2P23083 117 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 IL32P24001 234 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 PUDPQ08623 228 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 FOXD4Q12950 439 aaPredicted RBP17.59■□□□□ 0.41
COL9A3-202ENST00000452372 TRIM25Q14258 630 aaKnown RBP17.59■□□□□ 0.41
COL9A3-202ENST00000452372 TRAM2Q15035 370 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 TSPO2Q5TGU0 170 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 NHLRC1Q6VVB1 395 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 LRRC17Q8N6Y2 441 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 POMGNT2Q8NAT1 580 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 PFN4Q8NHR9 129 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 SLCO5A1Q9H2Y9 848 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 MUC13Q9H3R2 512 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 SLC7A10Q9NS82 523 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 CCM2LQ9NUG4 571 aaPredicted RBP17.59■□□□□ 0.41
COL9A3-202ENST00000452372 UPB1Q9UBR1 384 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 RCE1Q9Y256 329 aa17.59■□□□□ 0.41
COL9A3-202ENST00000452372 FAM32AQ9Y421 112 aaKnown RBP17.59■□□□□ 0.41
COL9A3-202ENST00000452372 OR6C65A6NJZ3 312 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 LYZL6O75951 148 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 SEMG1P04279 462 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 HIST1H2ABP04908 130 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 THBDP07204 575 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 ASAH2BP0C7U1 165 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 ADORA3P0DMS8 318 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 RHCEP18577 417 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 FUT1P19526 365 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 SELENOPP49908 381 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 CLDN17P56750 224 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 VLDLRP98155 873 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 IL1RL1Q01638 556 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 ZP4Q12836 540 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 FAPQ12884 760 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 TSC22D1Q15714 1073 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 NIPAL3Q6P499 406 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 HIST3H2AQ7L7L0 130 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 BHLHA15Q7RTS1 189 aaPredicted RBP17.58■□□□□ 0.4
COL9A3-202ENST00000452372 SLC46A3Q7Z3Q1 461 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 PXKQ7Z7A4 578 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 CDC20BQ86Y33 519 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 UEVLDQ8IX04 471 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 ZNF433Q8N7K0 673 aaPredicted RBP17.58■□□□□ 0.4
COL9A3-202ENST00000452372 PIK3C3Q8NEB9 887 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 LIPHQ8WWY8 451 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 HIST1H2ACQ93077 130 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 S100PBPQ96BU1 408 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 SGTBQ96EQ0 304 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 FOXC2Q99958 501 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 TMUB1Q9BVT8 246 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 ANKRD19PQ9H560 264 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 NMNAT1Q9HAN9 279 aaPredicted RBP17.58■□□□□ 0.4
COL9A3-202ENST00000452372 C20orf141Q9NUB4 165 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 TAS2R5Q9NYW4 299 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 ST6GALNAC2Q9UJ37 374 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 NOX1Q9Y5S8 564 aa17.58■□□□□ 0.4
COL9A3-202ENST00000452372 NAV3Q8IVL0 2385 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 PDLIM1O00151 329 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 TRAF3IP2O43734 574 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-202ENST00000452372 OR7A10O76100 309 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 ZNF432O94892 652 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 OR6A2O95222 327 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 HLA-DOBP13765 273 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 ITGA2P17301 1181 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 CRYGSP22914 178 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 IQCCQ4KMZ1 466 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 MTX3Q5HYI7 312 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 CYP2R1Q6VVX0 501 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 RNF113BQ8IZP6 322 aaKnown RBP17.57■□□□□ 0.4
COL9A3-202ENST00000452372 NINJ1Q92982 152 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 SLC7A6OSQ96CW6 309 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-202ENST00000452372 ZC3HAV1LQ96H79 300 aaKnown RBP17.57■□□□□ 0.4
COL9A3-202ENST00000452372 THTPAQ9BU02 230 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 CLEC4MQ9H2X3 399 aaPredicted RBP17.57■□□□□ 0.4
COL9A3-202ENST00000452372 TAS2R16Q9NYV7 291 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 V9GYQ6 96 aa17.57■□□□□ 0.4
COL9A3-202ENST00000452372 FLNAP21333 2647 aaKnown RBP17.57■□□□□ 0.4
COL9A3-202ENST00000452372 hCG_2039718K7EN88 272 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 GYG2O15488 501 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 PDE5AO76074 875 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 UMPSP11172 480 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 ATP6V1B2P21281 511 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 AHCYP23526 432 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 FOXG1P55316 489 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-202ENST00000452372 LSM11P83369 360 aaKnown RBP eCLIP17.56■□□□□ 0.42e-10■■□□□ 11.6
COL9A3-202ENST00000452372 MS4A2Q01362 244 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 POU3F1Q03052 451 aaPredicted RBP17.56■□□□□ 0.4
COL9A3-202ENST00000452372 BNIP1Q12981 228 aa17.56■□□□□ 0.4
COL9A3-202ENST00000452372 DNAL1Q4LDG9 190 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms